View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_11 (Length: 354)
Name: NF9917_low_11
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 65 - 332
Target Start/End: Original strand, 33694222 - 33694488
Alignment:
| Q |
65 |
gatgaaaattaaggaatattaattgtttagatgaaatgattcttttgtttacgaggagatgaaatccaagaagacaggacgtgagtgtttagatgccatg |
164 |
Q |
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| T |
33694222 |
gatgaaaattaaagaatattaattgtttagatgaaatgattcttttgtttacgaggagatgaaatccaagaagacaggacgtgagtgtttagatgccatg |
33694321 |
T |
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| Q |
165 |
caaacaatgacgaaattaaaaaggaaacagcctcctcgttgcgtgcatgggagggatacctttccataatcaatcaaaccattcagtcgccacgtgttac |
264 |
Q |
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| T |
33694322 |
caaacaatgacgaaattaaaaaggaaacagcctcctcgttgcgtgcatgggagggatacctttccataatcaatc-aaccattcagtcgccacgtgttac |
33694420 |
T |
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| Q |
265 |
gtaatctattttgttattttcgaccctttatcattattactttagtgccatcctaattcaaactaaaa |
332 |
Q |
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| T |
33694421 |
gtaatctattttgttattttcgaccctttatcattattactttaatgccatcctaattcaaactaaaa |
33694488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 33694133 - 33694202
Alignment:
| Q |
7 |
gtagcataggtgtataaatatacgtatagcatgcattgtatgaattacaataaagaatgatgaaaattaa |
76 |
Q |
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| T |
33694133 |
gtagcgtaggtgtataaatatacgtatagcatgcattgtatgaattacaataaagaatgatgaaaattaa |
33694202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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