View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_low_13 (Length: 346)

Name: NF9917_low_13
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_low_13
NF9917_low_13
[»] chr5 (4 HSPs)
chr5 (46-332)||(32002274-32002561)
chr5 (154-300)||(43275741-43275889)
chr5 (79-126)||(43275945-43275992)
chr5 (1-47)||(32001970-32002015)
[»] chr1 (4 HSPs)
chr1 (154-300)||(28486044-28486192)
chr1 (154-300)||(46090366-46090514)
chr1 (79-128)||(28486224-28486273)
chr1 (79-128)||(46090568-46090617)
[»] chr8 (2 HSPs)
chr8 (154-300)||(3194310-3194464)
chr8 (79-128)||(3194214-3194263)
[»] chr4 (2 HSPs)
chr4 (154-271)||(39834420-39834539)
chr4 (79-128)||(39834593-39834642)
[»] chr3 (3 HSPs)
chr3 (158-233)||(25227079-25227152)
chr3 (79-128)||(25227203-25227252)
chr3 (226-300)||(25226968-25227042)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 32002274 - 32002561
Alignment:
Q  46 tattatctttatacatgaaagagtatctaaatctatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatatatgctcaactttttcaaca 145  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002274 tattatctttacacatgaaagagtatctaaatctatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatatatgctcaactttttcaaca 32002373  T
Q  146 tgtagt-taaaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatgtgatttttgaa 244  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002374 tgtagtgtaaaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatgtgatttttgaa 32002473  T
Q  245 tataactaaagtgctggaatgataataataatttaatgcatccagactgtgtatgttaaaaagataaatttggcacggtggccctatg 332  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32002474 tataagtaaagtgctggaatgataataataatttaatgcatccagactgtgtatgttaaaaagataaatttggcacggtggccctatg 32002561  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 43275889 - 43275741
Alignment:
Q  154 aaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatg----tgatttttgaatataa 249  Q
    |||||||||||||||||  ||||||||| |||||||| |||| | | |||||||||||||||| ||||||||||| ||||    ||||| ||||||||||    
T  43275889 aaggagcataatatcttc-atgtcttctacaatttggaacgtgg-caagattccaagagcatgattattaactatctatgcatgtgattcttgaatataa 43275792  T
Q  250 ctaaagtgctggaatgataataataatttaatgcatccagactgtgtatgt 300  Q
      |||||| |||||||||||||||| ||||||| ||||||  |||||||||    
T  43275791 gcaaagtgttggaatgataataatagtttaatgtatccaggttgtgtatgt 43275741  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 43275992 - 43275945
Alignment:
Q  79 tatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatat 126  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||    
T  43275992 tatctgtgcaatcaaaagaaggagcagcaagcaatatttgcgtcatat 43275945  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32001970 - 32002015
Alignment:
Q  1 tgctatcaaaagttttgatatccgaatatcattcctaaaaacttata 47  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||    
T  32001970 tgctattaaaagttt-gatatccgaatatcattcctaaaaacttata 32002015  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 28486192 - 28486044
Alignment:
Q  154 aaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatg----tgatttttgaatataa 249  Q
    |||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||||| ||||||||||| ||||    ||||| ||||||||||    
T  28486192 aaggagcataatatcttt-atgtcttctacaatttggcacgtgg-caagattccaagagcatgattattaactatctatgcatgtgattcttgaatataa 28486095  T
Q  250 ctaaagtgctggaatgataataataatttaatgcatccagactgtgtatgt 300  Q
      |||||| |||| ||||||||||| ||||||| |||||| ||||||||||    
T  28486094 gcaaagtgttggactgataataatagtttaatgtatccaggctgtgtatgt 28486044  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 46090514 - 46090366
Alignment:
Q  154 aaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatg----tgatttttgaatataa 249  Q
    |||||||||||||||||| ||||||||| ||||||||||||| | | ||| |||||||||||| ||||||||||| ||||    ||||| ||||||||||    
T  46090514 aaggagcataatatcttt-atgtcttctacaatttggcacgtgg-caagactccaagagcatgattattaactatctatgcatgtgattcttgaatataa 46090417  T
Q  250 ctaaagtgctggaatgataataataatttaatgcatccagactgtgtatgt 300  Q
      |||||| |||||||||||||||| ||||||| ||||||  |||||||||    
T  46090416 gcaaagtgttggaatgataataatagtttaatgtatccaggttgtgtatgt 46090366  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 28486273 - 28486224
Alignment:
Q  79 tatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatatat 128  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  28486273 tatctgtgcgatcaaaagcaggagcagcaagcaatatttgcgtcatatat 28486224  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 46090617 - 46090568
Alignment:
Q  79 tatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatatat 128  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  46090617 tatctgtgcactcaaaagcaggagcagcaagcaatatttgcgtcatatat 46090568  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 300
Target Start/End: Original strand, 3194310 - 3194464
Alignment:
Q  154 aaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaacta----------tgtatgtgatttttga 243  Q
    |||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||||| ||||||||||          || |||||||| ||||    
T  3194310 aaggagcataatatcttt-atgtcttctacaatttggcacgtgg-caagattccaagagcatgattattaactatctatgcatgtgaatgtgattcttga 3194407  T
Q  244 atataactaaagtgctggaatgataataataatttaatgcatccagactgtgtatgt 300  Q
    ||||||  ||| || |||||||||||||||| ||||||| ||||||  |||||||||    
T  3194408 atataagcaaattgttggaatgataataatagtttaatgtatccaggttgtgtatgt 3194464  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 3194214 - 3194263
Alignment:
Q  79 tatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatatat 128  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  3194214 tatctgtgcaatcaaaagcaggagcagcaagcaatatttgcgttatatat 3194263  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 39834539 - 39834420
Alignment:
Q  154 aaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatg----tgatttttgaatataa 249  Q
    |||||||||||||||||| ||||||||| ||||||||||||| | | |||||| ||||||||| ||||||||||| ||||    ||||| || |||||||    
T  39834539 aaggagcataatatcttt-atgtcttctacaatttggcacgtcg-caagattcaaagagcatgattattaactatctatgcatgtgattcttaaatataa 39834442  T
Q  250 ctaaagtgctggaatgataata 271  Q
      |||||| |||||||||||||    
T  39834441 gcaaagtgttggaatgataata 39834420  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 39834642 - 39834593
Alignment:
Q  79 tatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatatat 128  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  39834642 tatctgtgcaatcaaaagcaggagcagcaagcaatatttgcgtcatatat 39834593  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 25227152 - 25227079
Alignment:
Q  158 agcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatg 233  Q
    |||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||||| ||||||||||| ||||    
T  25227152 agcataatatcttt-atgtcttctacaatttggcacgtgg-caagattccaagagcatgattattaactatttatg 25227079  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 25227252 - 25227203
Alignment:
Q  79 tatctgtgcaatcaaaagcaggagcagcaagcagcatttgcgtcatatat 128  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||    
T  25227252 tatctgtgcaatcaaaagcaggagcagcaagcaatgtttgcgtcatatat 25227203  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 25227042 - 25226968
Alignment:
Q  226 tatgtatgtgatttttgaatataactaaagtgctggaatgataataataatttaatgcatccagactgtgtatgt 300  Q
    |||| |||||||| ||||||||||  |||||| |||||||||||||||| ||||||| ||| ||  |||||||||    
T  25227042 tatgcatgtgattcttgaatataagcaaagtgttggaatgataataatagtttaatgtatctaggttgtgtatgt 25226968  T

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