View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_low_15 (Length: 336)

Name: NF9917_low_15
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_low_15
NF9917_low_15
[»] scaffold0392 (2 HSPs)
scaffold0392 (1-177)||(13489-13665)
scaffold0392 (171-319)||(13313-13461)
[»] scaffold0055 (9 HSPs)
scaffold0055 (171-319)||(20759-20908)
scaffold0055 (171-319)||(23998-24147)
scaffold0055 (171-319)||(37231-37380)
scaffold0055 (171-319)||(62102-62251)
scaffold0055 (171-319)||(17778-17927)
scaffold0055 (171-319)||(45080-45229)
scaffold0055 (171-319)||(57805-57954)
scaffold0055 (171-319)||(76495-76644)
scaffold0055 (171-244)||(29166-29239)
[»] scaffold0052 (10 HSPs)
scaffold0052 (171-319)||(8987-9136)
scaffold0052 (171-319)||(12189-12338)
scaffold0052 (171-319)||(16383-16532)
scaffold0052 (171-319)||(34823-34972)
scaffold0052 (171-319)||(58077-58226)
scaffold0052 (171-319)||(21002-21151)
scaffold0052 (171-319)||(39677-39826)
scaffold0052 (171-319)||(43398-43547)
scaffold0052 (171-319)||(55409-55558)
scaffold0052 (171-244)||(66826-66899)
[»] scaffold0152 (2 HSPs)
scaffold0152 (171-319)||(36327-36476)
scaffold0152 (171-319)||(27550-27700)
[»] scaffold0515 (1 HSPs)
scaffold0515 (171-319)||(9930-10080)


Alignment Details
Target: scaffold0392 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 13665 - 13489
Alignment:
Q  1 ccctttgagtttatcttctagtataaacactttgaaagtgtttgtgatagtttattatggtaacaatttattttcattataagctcttcgagatagaata 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13665 ccctttgagtttatcttttagtataaacactttgaaagtgtttgtgatagtttattatggtaacaatttatttttattataagctcttcgagatagaata 13566  T
Q  101 attaactcaaatgttaatcggtcaccacatggaacgggatcgtggcagtaaggtcactttgccacttacaattctac 177  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  13565 attaactcaaatgtcaatcggtcaccacgtggaacgggatcatggcagtaatgtcactttgccacttacaatactac 13489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 13461 - 13313
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctgggggccaagg 270  Q
    ||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13461 attctacccgccgctcaataggaattgtgtttcaaagtgtctcataaggctcatccgtcttacgaggtccaccaacgacacgtccctctgggggccaagg 13362  T
Q  271 ccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  13361 ccctctactactggtcggcaagcgaacgacgagcacacacatcgcttct 13313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 94; Significance: 7e-46; HSPs: 9)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 20759 - 20908
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  20759 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 20858  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  20859 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 20908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 23998 - 24147
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  23998 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 24097  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  24098 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 24147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 37231 - 37380
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  37231 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctcttgggggccaag 37330  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  37331 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 37380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 62102 - 62251
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  62102 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 62201  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  62202 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 62251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 17927 - 17778
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctggggg-ccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||| | ||| |||||||||| |||||    
T  17927 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacggggtccaccaacggcacgtgcctctggggggccaag 17828  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  17827 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 17778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 45080 - 45229
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctgggg-gccaag 269  Q
    ||||||| ||||  ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||||||| ||||||    
T  45080 attctacccgccactcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 45179  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  45180 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 45229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 57805 - 57954
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctgggg-gccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||| | ||| ||||||||| ||||||    
T  57805 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacggggtccaccaacggcacgtgcctctggggggccaag 57904  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  57905 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 57954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 76495 - 76644
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctgggg-gccaag 269  Q
    ||||||| ||||| |||||| |||||| |||||||| |||||| ||||||||||||| |||||| |||||||||||| | ||| ||||||||| ||||||    
T  76495 attctacccgccgctcaataggaattgcgtttcaaattgtcccgtaaggctcatccgccttacgcggtccaccaacggcacgtgcctctggggggccaag 76594  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  76595 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 76644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 29239 - 29166
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccacca 244  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||| ||||||||||||| |||||| |||||||||    
T  29239 attctacccgccgctcaataggaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgcggtccacca 29166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 94; Significance: 7e-46; HSPs: 10)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 8987 - 9136
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  8987 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 9086  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9087 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 9136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 12189 - 12338
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  12189 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 12288  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  12289 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 12338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 16532 - 16383
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  16532 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctcttgggggccaag 16433  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  16432 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 16383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 34972 - 34823
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  34972 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 34873  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  34872 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 34823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 58077 - 58226
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  58077 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 58176  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  58177 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 58226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 21002 - 21151
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctgggg-gccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||| | ||| ||||||||| ||||||    
T  21002 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacggggtccaccaacggcacgtgcctctggggggccaag 21101  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  21102 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 21151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 39826 - 39677
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctggggg-ccaag 269  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||| | ||| |||||||||| |||||    
T  39826 attctacccgccgctcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacggggtccaccaacggcacgtgcctctggggggccaag 39727  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  39726 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 39677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 43398 - 43547
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctgggg-gccaag 269  Q
    ||||||| ||||| |||||| |||||| |||||||| |||||| ||||||||||||| |||||| |||||||||||| | ||| ||||||||| ||||||    
T  43398 attctacccgccgctcaataggaattgcgtttcaaattgtcccgtaaggctcatccgccttacgcggtccaccaacggcacgtgcctctggggggccaag 43497  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  43498 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 43547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 55409 - 55558
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctctgggg-gccaag 269  Q
    ||||||| ||||  ||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||||||| ||||||    
T  55409 attctacccgccactcaatagaaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 55508  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  55509 gccccctactgctggtcggcaagcgaacgacgggcacacgcatcgcttct 55558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 66826 - 66899
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccacca 244  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||| ||||||||||||| |||||| |||||||||    
T  66826 attctacccgccgctcaataggaattgcgtttcaaagtgtcccgtaaggctcatccgccttacgcggtccacca 66899  T

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Target: scaffold0152 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 36476 - 36327
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct-gggggccaag 269  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||| | ||| ||||| ||||||||||    
T  36476 attctacccgccgctcaataggaattgcgtttcaaagtgtcccgtaaggttcatccgccttacgaggtccaccaacggcacgtgcctctggggggccaag 36377  T
Q  270 gccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    |||||||||||||||||| || | |||||||  | |||||||||||||||    
T  36376 gccccctactgctggtcgacatgtgaacgacaggaacacacatcgcttct 36327  T

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Target: scaffold0152; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 27700 - 27550
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct--gggggccaa 268  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||| | ||| |||||  |||||||||    
T  27700 attctacccgccgctcaataggaattgcgtttcaaagtgtcccgtaaggttcatccgccttacgaggtccaccaacggcacgtgcctctgggggggccaa 27601  T
Q  269 ggccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    ||||||||||||||||||| || | |||||||  | |||||||||||||||    
T  27600 ggccccctactgctggtcgacatgtgaacgacaggaacacacatcgcttct 27550  T

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Target: scaffold0515 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 10080 - 9930
Alignment:
Q  171 attctacgcgccgttcaatatgaattgtgtttcaaagtgtcccataaggctcatccgtcttacgaggtccaccaacgactcgtccctct--gggggccaa 268  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||| | ||| |||||  |||||||||    
T  10080 attctacccgccgctcaataggaattgcgtttcaaagtgtcccgtaaggttcatccgccttacgaggtccaccaacggcacgtgcctctgggggggccaa 9981  T
Q  269 ggccccctactgctggtcggcaagcgaacgacgagcacacacatcgcttct 319  Q
    ||||||||||||||||||| || | |||||||  | |||||||||||||||    
T  9980 ggccccctactgctggtcgacatgtgaacgacaggaacacacatcgcttct 9930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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