View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_low_16 (Length: 315)

Name: NF9917_low_16
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_low_16
NF9917_low_16
[»] chr5 (9 HSPs)
chr5 (19-305)||(34230625-34230911)
chr5 (19-283)||(34238680-34238944)
chr5 (84-292)||(42125507-42125715)
chr5 (104-290)||(42130734-42130920)
chr5 (104-292)||(41711694-41711882)
chr5 (27-251)||(42118947-42119183)
chr5 (103-290)||(41569923-41570110)
chr5 (22-60)||(42125742-42125780)
chr5 (26-77)||(42130947-42130998)
[»] chr6 (2 HSPs)
chr6 (82-289)||(25520908-25521115)
chr6 (26-76)||(25520840-25520890)
[»] chr3 (3 HSPs)
chr3 (102-292)||(8524962-8525152)
chr3 (26-76)||(8525199-8525249)
chr3 (19-75)||(8528648-8528703)
[»] chr4 (2 HSPs)
chr4 (106-274)||(11120299-11120467)
chr4 (26-72)||(11120516-11120562)
[»] chr2 (1 HSPs)
chr2 (104-276)||(12250344-12250516)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 34230625 - 34230911
Alignment:
Q  19 cttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgttgaatctcctatgaaaacagcaacatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34230625 cttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgttaaatctcctatgaaaacagcaacatgg 34230724  T
Q  119 aaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgtgaaggctttcaaggta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34230725 aaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggctgtgaaggctttcaaggta 34230824  T
Q  219 tactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctctaacgatttctctg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230825 tactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctctaacgatttctctg 34230911  T

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Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 34238680 - 34238944
Alignment:
Q  19 cttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgttgaatctcctatgaaaacagcaacatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34238680 cttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactatagatactccttgtgttaaatctcctatgaaaacagcaacatgg 34238779  T
Q  119 aaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgtgaaggctttcaaggta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  34238780 aaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggttgtgaaggctttcaaggta 34238879  T
Q  219 tactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaat 283  Q
    |||||||||||||||||||||||||| || ||| ||| || ||||  ||||||||||| ||||||    
T  34238880 tactccatcctaatagtacccttttcaatattgttcatctccaaacactcaacctttctaacaat 34238944  T

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Target: chr5; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 42125715 - 42125507
Alignment:
Q  84 cttgtgttgaatctcctatgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcat 183  Q
    |||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |  || |||| || ||    
T  42125715 cttgtgatggatctcttctgaaaacagcaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgtgataccatcactcgtcacgtgat 42125616  T
Q  184 tggccttaaccttggctgtgaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaat 283  Q
    |||||| || ||||||||||||||| ||||||||| ||| |||||||| |||||||||||| |||||| ||| |||||||  ||||||||||| ||||||    
T  42125615 tggcctcaatcttggctgtgaaggccttcaaggtaaactacatcctaacagtacccttttcaatcttgttcatcttcaaacactcaacctttctaacaat 42125516  T
Q  284 tatttctct 292  Q
     ||||||||    
T  42125515 gatttctct 42125507  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 104 - 290
Target Start/End: Complemental strand, 42130920 - 42130734
Alignment:
Q  104 aaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgtg 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||| || |||| ||| |||||||||||||    
T  42130920 aaaacagcaacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaaccttggctgtg 42130821  T
Q  204 aaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttct 290  Q
    ||||| ||  ||||| | || ||||||||||||||||||| ||||||| ||| || ||||  |||||||||||  ||||| ||||||    
T  42130820 aaggccttacaggtacattcaatcctaatagtaccctttttcatcttgttcatctccaaacactcaacctttcttacaatgatttct 42130734  T

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Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 104 - 292
Target Start/End: Original strand, 41711694 - 41711882
Alignment:
Q  104 aaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgtg 203  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||  |||||||| ||||||||||| | |||||  ||  ||||||| |||||||||||||    
T  41711694 aaaacaacaacatggaaaaatgagactgattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggttggcctcaaccttggctgtg 41711793  T
Q  204 aaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctct 292  Q
    | ||| ||||||||||| |||||||||||| ||| ||||||||||||| ||| || ||||  |||||||||||  ||||| ||||||||    
T  41711794 atggccttcaaggtatattccatcctaataatactcttttccatcttgttcatctccaaacactcaacctttcttacaatgatttctct 41711882  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 42119183 - 42118947
Alignment:
Q  27 atcatgatgagagctttgctttgcttcagttcaagtcctccttcactataga------tactccttgtgttg---aatctcctatgaaaacagcaacatg 117  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||      ||||  || | ||    || |||| |  ||||| ||||||||    
T  42119183 atcatgatgagagctctgctctgcttcagttcaagtcctccttcactatagaagatattacttattatatttttaaacctccgagtaaaactgcaacatg 42119084  T
Q  118 gaaaaatgggactgattgctgc---tcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgtgaaggctttcaa 214  Q
    ||||||||||||||||||||||   ||||||||||||||| |||||| ||  || |||||||| || ||||| || |||||||||| | || || ||       
T  42119083 gaaaaatgggactgattgctgctcatcatggcatggtgtcgcgtgtgtcagagtctctggtcacgtgattggtctcaaccttggcttttaacgccttact 42118984  T
Q  215 ggtatactccatcctaatagtacccttttccatcttg 251  Q
    |||| | | |||||||| | |||||||||||||||||    
T  42118983 ggtaaattacatcctaacaatacccttttccatcttg 42118947  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 290
Target Start/End: Original strand, 41569923 - 41570110
Alignment:
Q  103 gaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgt 202  Q
    ||||||| |||||||||||| || |||  |||| || |||||||||||||||||||| ||| | || |||||||  || ||||| ||  |||||||||||    
T  41569923 gaaaacatcaacatggaaaattgagacaaattgttgttcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgt 41570022  T
Q  203 gaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttct 290  Q
    ||| || ||||||||| | |  ||||||| |  || ||||| ||||||||||| || |||   |||||||||||  ||||| ||||||    
T  41570023 gaatgccttcaaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctcacaatgatttct 41570110  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 42125780 - 42125742
Alignment:
Q  22 atgtcatcatgatgagagctttgctttgcttcagttcaa 60  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  42125780 atgtcatcatgatgagagctctgctttgcttcagttcaa 42125742  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 42130998 - 42130947
Alignment:
Q  26 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactatag 77  Q
    |||||| |||| |||| ||||||||||||||||||||| ||||||| |||||    
T  42130998 catcataatgacagctctgctttgcttcagttcaagtcatccttcattatag 42130947  T

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Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 82 - 289
Target Start/End: Original strand, 25520908 - 25521115
Alignment:
Q  82 tccttgtgttgaatctcctatgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtc 181  Q
    |||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||   | |||||  ||     
T  25520908 tccttgtgatgaatctcttctgaaaacagcaacatggaaatatgggactgattgctgctcatggcatggtgtcacatgcgacaccacttttggtcgcgtg 25521007  T
Q  182 attggccttaaccttggctgtgaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaaca 281  Q
    |||||||| |||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||  ||||||  |||||||||||  |||    
T  25521008 attggcctcaaccttggctgtgaaggcctccaaggtatattccatcctaatagtactcttttccatcttgctcatattcaaaaactcaacctttcttaca 25521107  T
Q  282 attatttc 289  Q
    || |||||    
T  25521108 atgatttc 25521115  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 25520840 - 25520890
Alignment:
Q  26 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 76  Q
    |||| ||||||||||| |||| |||||||||| || |||||||||||||||    
T  25520840 catcgtgatgagagctctgctctgcttcagtttaaatcctccttcactata 25520890  T

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Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 102 - 292
Target Start/End: Complemental strand, 8525152 - 8524962
Alignment:
Q  102 tgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctg 201  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |   |||||| || |||||||| |||||||||||    
T  8525152 tgaaaacagcaacatggaaaaatgagattgattgctgctcatgggatggtgtcacgtgtgacaccatcagtggtcacgtgattggcctcaaccttggctg 8525053  T
Q  202 tgaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctct 292  Q
    ||||||  ||||||| |||||| ||||||| ||||||||||||||||||||| |  ||||||  ||||||||| | |||||| ||||||||    
T  8525052 tgaaggtcttcaaggcatactcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaaccttgctaacaatgatttctct 8524962  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 8525249 - 8525199
Alignment:
Q  26 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 76  Q
    |||||| ||||||||| |||||||||||| |||||||| ||||||||||||    
T  8525249 catcattatgagagctctgctttgcttcatttcaagtcatccttcactata 8525199  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 8528703 - 8528648
Alignment:
Q  19 cttatgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactat 75  Q
    |||||| |||||||||| || || || |||||||||||||||||| |||||||||||    
T  8528703 cttatgccatcatgatgtgaactatg-tttgcttcagttcaagtcatccttcactat 8528648  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 274
Target Start/End: Complemental strand, 11120467 - 11120299
Alignment:
Q  106 aacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgtgaa 205  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||||  || |||||||| || ||||||||||||    
T  11120467 aacaacaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaa 11120368  T
Q  206 ggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctt 274  Q
    ||  ||||||| ||| | ||||| |||||||||||||||||||||| ||| || ||||  |||||||||    
T  11120367 ggtcttcaaggcatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaacctt 11120299  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 11120562 - 11120516
Alignment:
Q  26 catcatgatgagagctttgctttgcttcagttcaagtcctccttcac 72  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  11120562 catcacgatgagagctttgctttgcttcagttcgagtcctccttcac 11120516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 104 - 276
Target Start/End: Complemental strand, 12250516 - 12250344
Alignment:
Q  104 aaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcatgtcattggccttaaccttggctgtg 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  | | ||||||||| ||||||||  ||||||||  ||    
T  12250516 aaaacagcaacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggcctcgaccttggcgatg 12250417  T
Q  204 aaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttc 276  Q
    ||||| || | |||||| | || |||||||||||||||||| |||||||||| || ||||  |||||||||||    
T  12250416 aaggccttgatggtatattacaacctaatagtacccttttcgatcttgctcatctccaaacactcaacctttc 12250344  T

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