View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_21 (Length: 255)
Name: NF9917_low_21
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 27715172 - 27715312
Alignment:
| Q |
99 |
acccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacag-ta |
197 |
Q |
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| T |
27715172 |
acccgaattgcaatgctcaaaacagccaggacaaaagcgctttacagactgcgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacagata |
27715271 |
T |
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| Q |
198 |
tcaattcaggaaccacaccactcgtcttcctgacattgagg |
238 |
Q |
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| T |
27715272 |
tcaattcaggaaccacaccactcgtcttcctgacattgagg |
27715312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 44753763 - 44753634
Alignment:
| Q |
52 |
acaccttcaatgttgcgcagaacaccccctacacaacagctttgcctacccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacg |
151 |
Q |
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| T |
44753763 |
acacctttattgttgcgcagaacaccccttataataaagttttgcctacccgaactgctatgctcaaaacagccaagaaaaaagcgcttgacagactaca |
44753664 |
T |
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| Q |
152 |
catgacagaaaacaccggcaaacaaaaact |
181 |
Q |
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| T |
44753663 |
catgaccgaaaacactggtaaacaaaaact |
44753634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44753895 - 44753839
Alignment:
| Q |
1 |
caagaaaatatacaccaagaccatggggcagcagcagagtgcacttctcagacacct |
57 |
Q |
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| T |
44753895 |
caagaaaaaatacaccaaggccatggaacagcagcagagtgcacttctcaaacacct |
44753839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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