View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_25 (Length: 252)
Name: NF9917_low_25
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 43268310 - 43268067
Alignment:
| Q |
13 |
caaaggaacatttatatctatctatatacgaatgaattataaaatgttggaatataattggtaattgatacttaaaatgatgnnnnnnnt----ggatac |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43268310 |
caaaggaacatttatatctatctatataggaatgaattataaaatgttggaatataattggtaattgatacttaaaatgatggaaaaaaaaaaaggatac |
43268211 |
T |
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| Q |
109 |
ttacagagctaattccggctgcnnnnnnnggaataggcccgggcttctgatcactggaaccggcggcagcacccttagcagcacgataagcatcaggtgg |
208 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43268210 |
ttacagagctaattccggctgcgaaaaaaggaataggcccgggcttctgatcactggaagcggcggcagcacccttagcagcacgataagcatcaggtgg |
43268111 |
T |
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| Q |
209 |
catttgaccatacacaacagaaacattaacaccagctttctccc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43268110 |
catttgaccatacacaacagaaacattaacaccagctttctccc |
43268067 |
T |
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