View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_28 (Length: 243)
Name: NF9917_low_28
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 40715873 - 40715662
Alignment:
| Q |
18 |
ttctcttctttccttttactttttctttctagtttctactatatatcatcatttgtgttagagaagaatttactatttttatttcttgattcattttgat |
117 |
Q |
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| T |
40715873 |
ttctcttctttccttttactttttctttctagtttctactatatatcatcatttgtgttagagaagaatttactatttttatttcttgattcattttgat |
40715774 |
T |
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| Q |
118 |
ttgttacttcatgttcatacatagagtgtttggtctaatggtctgttttctatttttattttcagttgatatcttgttcttaatggtaattacaaaagta |
217 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40715773 |
ttgttacttcatggtcatacattgagtgtttggtctaatggtctgttttctatttttattttcagttgatatcttgttcttaatggtaattacaaaagta |
40715674 |
T |
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| Q |
218 |
gcacattgatgt |
229 |
Q |
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| T |
40715673 |
gcacattgatgt |
40715662 |
T |
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