View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_low_3 (Length: 469)

Name: NF9917_low_3
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_low_3
NF9917_low_3
[»] chr7 (3 HSPs)
chr7 (13-161)||(27658121-27658269)
chr7 (321-455)||(33602400-33602528)
chr7 (239-298)||(27656844-27656903)
[»] chr5 (5 HSPs)
chr5 (13-161)||(37605795-37605941)
chr5 (22-149)||(33360981-33361104)
chr5 (22-149)||(5742432-5742556)
chr5 (239-303)||(37606029-37606093)
chr5 (259-301)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (22-149)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (22-149)||(18085257-18085380)
chr6 (239-303)||(31559482-31559546)
[»] chr4 (1 HSPs)
chr4 (264-301)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 27658269 - 27658121
Alignment:
Q  13 gagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgtt 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658269 gagacaggcggagtgaccgaaaatagcatgagagggtggcactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgtt 27658170  T
Q  113 cttgcttataggaaatgagtgaatcagagagagggaaggaaaacgaaac 161  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27658169 cttgcttataggaaatgagtgaatcagagagagagaaggaaaacgaaac 27658121  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 321 - 455
Target Start/End: Complemental strand, 33602528 - 33602400
Alignment:
Q  321 aaaaacatatttaatcgtttaatatttcatttcactatttcgctatttgccagctcatacttctaaccgtttcttattcacttttgccgccatataacaa 420  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33602528 aaaaacatatttaatcgtttaatatttcatttcat------gctatttgccagctcatacttctaatcgtttcttattcacttttgccgccatataacaa 33602435  T
Q  421 accatatttcatttgaacaaaactagagaaagaaa 455  Q
    |||||||||||||||||||| ||||||||||||||    
T  33602434 accatatttcatttgaacaatactagagaaagaaa 33602400  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 27656903 - 27656844
Alignment:
Q  239 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcatt 298  Q
    ||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  27656903 tattgaggaacagtctatggtatcatttttgtgtttgtatttttgtgtttacttatcatt 27656844  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 37605795 - 37605941
Alignment:
Q  13 gagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgtt 112  Q
    |||| ||| |||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||    
T  37605795 gagataggtggagcgaccgaaaatagcatgag--ggtggcactgtacaaagatgaagaaggagtgacgagaacctatgagtgaatgaaagatgatttttt 37605892  T
Q  113 cttgcttataggaaatgagtgaatcagagagagggaaggaaaacgaaac 161  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  37605893 cttgctcataggaaatgagtgattcagaaagagggaaggaaaacgaaac 37605941  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 33360981 - 33361104
Alignment:
Q  22 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 121  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  33360981 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaat 33361076  T
Q  122 aggaaatgagtgaatcagagagagggaa 149  Q
     |||||||| ||||||||| ||||||||    
T  33361077 gggaaatgactgaatcagaaagagggaa 33361104  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 5742556 - 5742432
Alignment:
Q  22 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 121  Q
    |||||||| | ||||||||||||||||||| |||| ||||||||||||   |||||| ||| | |||  |||||||||||||| ||| |||||| || ||    
T  5742556 ggagtgactggaaatagcatgagagggtggcactgcacaaagatgaag---gagtgatgagcaactactagtgaatgaaagatgattagttctttctcat 5742460  T
Q  122 aggaaatgagtgaatcagagagagggaa 149  Q
    ||||||| ||||||||||| ||||||||    
T  5742459 aggaaattagtgaatcagaaagagggaa 5742432  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 37606029 - 37606093
Alignment:
Q  239 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctgt 303  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  37606029 tattgagtaacagtgtatggtgtcatatttgtgtttgtattattgtgtttacttatcattcctgt 37606093  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 30891806 - 30891764
Alignment:
Q  259 tgtcatttttgtgtttgtatttttgtgtttacttatcattcct 301  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  30891806 tgtcgtttttgtgtttgtatttttgtgttcacttatcattcct 30891764  T

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Target: scaffold0856 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 1228 - 1351
Alignment:
Q  22 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 121  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  1228 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagatgatttgttcttgatcat 1323  T
Q  122 aggaaatgagtgaatcagagagagggaa 149  Q
     |||||||| ||||||||| ||||||||    
T  1324 gggaaatgactgaatcagaaagagggaa 1351  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 18085257 - 18085380
Alignment:
Q  22 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 121  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  18085257 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaat 18085352  T
Q  122 aggaaatgagtgaatcagagagagggaa 149  Q
     |||||||| ||||||||| ||||||||    
T  18085353 gggaaatgactgaatcagaaagagggaa 18085380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 31559546 - 31559482
Alignment:
Q  239 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctgt 303  Q
    |||||||||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  31559546 tattgagtaacagtgtatggtgtcatatttatgtttgtattattgtgtttacttatcattcctgt 31559482  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 7453604 - 7453567
Alignment:
Q  264 tttttgtgtttgtatttttgtgtttacttatcattcct 301  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7453604 tttttgtgtttgtatttttgtgttcacttatcattcct 7453567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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