View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_30 (Length: 241)
Name: NF9917_low_30
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47485812 - 47486034
Alignment:
| Q |
1 |
catgtgagaaaaacagataaggatgttatccccctcatcgtttctcttgttcaacaaaacaagtatatatttgcaatggaatggacatatacatatttta |
100 |
Q |
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| T |
47485812 |
catgtgagaaaaacagataaggatgttatccccctcatcgtttctcttgttcaacaaaacaagtatatatttgcaatggaatggacatatacatatttta |
47485911 |
T |
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| Q |
101 |
caaaatacgccaacagagcaaccaatatttaattcatgattaagatttgatcaatgctattacataattaagcatatcctacacatataatttaagtgct |
200 |
Q |
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| T |
47485912 |
caaaatacgccaacagagcaaccaatatttaattcatgattaagatttgatcaatgctattacataattaagtatatcctacacatataatttaagtgct |
47486011 |
T |
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| Q |
201 |
aaaatgctttaccagggagctaa |
223 |
Q |
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| T |
47486012 |
aaaatgctttaccagggagctaa |
47486034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 24802518 - 24802590
Alignment:
| Q |
97 |
tttacaaaatacgccaacagagcaaccaatatttaattcatgattaagatttgatcaatgctattacataatt |
169 |
Q |
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||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24802518 |
tttacaaaataagacaacaaagcaatcaatatttaattcatgattaagatttgatcaatgctattgcataatt |
24802590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 47476415 - 47476487
Alignment:
| Q |
97 |
tttacaaaatacgccaacagagcaaccaatatttaattcatgattaagatttgatcaatgctattacataatt |
169 |
Q |
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| T |
47476415 |
tttacaaaataagacaacaaagcaatcaatatttaattcatgattaagatttgatcaatgctattgcataatt |
47476487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 47473161 - 47473219
Alignment:
| Q |
97 |
tttacaaaatacgccaacagagcaaccaatatttaattcatgattaagatttgatcaat |
155 |
Q |
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||||||||||| | ||||| | ||||||||||||||| ||||||||||||||||||||| |
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| T |
47473161 |
tttacaaaataagacaacaaaccaaccaatatttaatacatgattaagatttgatcaat |
47473219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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