View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_32 (Length: 237)
Name: NF9917_low_32
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9892852 - 9892629
Alignment:
| Q |
1 |
ttgaaacaaggagtacctttgaatttcttgaccaactttttgccaaaacaaggtcaattgacatggatacgtaaacaaccattacacgcaacattcaact |
100 |
Q |
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| T |
9892852 |
ttgaaacaaggagtacctttgaatttcttgaccaactttttgccaaaacaaggtcaattgacatggatacgtaaacaaccattacatgcaacattcaact |
9892753 |
T |
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| Q |
101 |
tgtatgatcctaacacagaaggagaccatnnnnnnntattttggtcagtgcggcaagatggtgtatatcatagctgggataatgtcaattggaataaaaa |
200 |
Q |
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| T |
9892752 |
tgtatgatcctaacacagaaggagaccataaaaaaatattttggtcagtgaggcaagatggtgtatatcatagctgggataatgtcaattggaataaaaa |
9892653 |
T |
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| Q |
201 |
tacaaaatggagcacttgaatact |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
9892652 |
tacaaaatggagcacttgaatact |
9892629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 9212424 - 9212589
Alignment:
| Q |
59 |
tgacatggatacgtaaacaaccattacacgcaacattcaacttgtatgatcctaacacagaaggagaccatnnnnnnntattttggtcagtgcggcaaga |
158 |
Q |
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| T |
9212424 |
tgacatgggtgcgtcaacaaccactacatgcaacattcaacttgtatgatcctaacgtagaaggagacaataaaaaaatctattggtcagcaagggaaga |
9212523 |
T |
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| Q |
159 |
tggtgtatatcatagctgggataatgtcaattggaataaaaatacaaaatggagcacttgaatact |
224 |
Q |
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| T |
9212524 |
tggtgtgtatcatagtttggataatgtcaattggaataaaaatacaaattggagcacttgaatact |
9212589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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