View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_33 (Length: 235)
Name: NF9917_low_33
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43267841 - 43267619
Alignment:
| Q |
1 |
tttctttttctattgaaacggttgcttttgttataagtcgttgaaagtggtgagaagatgtggttttacgcgtttgtgtagtgagtgattttgggggtgt |
100 |
Q |
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| T |
43267841 |
tttctttttcaattgaaacggttgcttttgttataagtcgttgaaagtggtgagaagatgtggttttacgggtttgtgtagtgagtgattttgggggtgt |
43267742 |
T |
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| Q |
101 |
atgagaaatatgagagatttgagttgattttgaagatgtgaatgtgaagaagggagtgatggagtaagaaggagctgatatagaaattgtacacggcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43267741 |
atgagaaatatgagagatttgagttgattttgaagatgtgaatgtgaagaagggagtgatggagtaagaaggagctgatatagaaattgtacacggcatt |
43267642 |
T |
|
| Q |
201 |
gtaacgagaaatggtgttcgttt |
223 |
Q |
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|||| |||||||||||||||||| |
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| T |
43267641 |
gtaaagagaaatggtgttcgttt |
43267619 |
T |
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