View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917_low_5 (Length: 440)

Name: NF9917_low_5
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917_low_5
NF9917_low_5
[»] chr4 (4 HSPs)
chr4 (135-398)||(10634071-10634339)
chr4 (290-426)||(3438258-3438394)
chr4 (303-424)||(55908336-55908457)
chr4 (303-422)||(53761398-53761517)
[»] chr6 (9 HSPs)
chr6 (303-400)||(6602840-6602937)
chr6 (298-424)||(7993793-7993919)
chr6 (302-397)||(7131983-7132078)
chr6 (303-405)||(19632785-19632887)
chr6 (298-349)||(6426855-6426906)
chr6 (141-235)||(6594411-6594505)
chr6 (290-420)||(6432512-6432635)
chr6 (381-426)||(8913678-8913723)
chr6 (303-355)||(10579435-10579487)
[»] chr1 (12 HSPs)
chr1 (38-237)||(29718792-29718994)
chr1 (130-237)||(29658765-29658872)
chr1 (130-237)||(29691280-29691387)
chr1 (298-424)||(33160869-33160995)
chr1 (130-237)||(33160696-33160803)
chr1 (303-425)||(19468115-19468237)
chr1 (135-205)||(30827304-30827374)
chr1 (326-423)||(52093167-52093264)
chr1 (302-424)||(29658564-29658686)
chr1 (302-424)||(29691079-29691201)
chr1 (302-424)||(29718591-29718713)
chr1 (299-367)||(52082947-52083015)
[»] chr5 (2 HSPs)
chr5 (8-71)||(17205597-17205660)
chr5 (292-400)||(20477717-20477825)
[»] chr2 (1 HSPs)
chr2 (303-424)||(1037272-1037393)
[»] chr8 (1 HSPs)
chr8 (290-400)||(17627691-17627801)
[»] scaffold0262 (1 HSPs)
scaffold0262 (303-424)||(287-408)
[»] chr3 (1 HSPs)
chr3 (306-359)||(514401-514454)
[»] chr7 (3 HSPs)
chr7 (297-400)||(15091786-15091889)
chr7 (303-357)||(10169814-10169868)
chr7 (303-357)||(10177339-10177393)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 398
Target Start/End: Complemental strand, 10634339 - 10634071
Alignment:
Q  135 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact 234  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  10634339 caataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctcccaacagctcacagtgagccaaacaaagagact 10634240  T
Q  235 ttagtcgacgtccttcnnnnnnntcatcgtaagaataagaactctctacactcat-----caatagacgtgcattccattttgatctcactaagagaagg 329  Q
    | ||| || ||| | |       ||     |||||| |||| |||| | | || |     |||||||||||||||||||||||||||||||||| |||||    
T  10634239 taagttgaggtcttccaacaaaatccctcaaagaattagaattctcgaaattctttttcccaatagacgtgcattccattttgatctcactaagtgaagg 10634140  T
Q  330 acagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacac 398  Q
    |||||||||||| ||  |||  || ||||| ||  |||||| | |||||||||||||||||||||||||    
T  10634139 acagtttctaactaggtaaaaaaacgataactcgatgagaaacatacattcactaaggtttatagacac 10634071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 426
Target Start/End: Complemental strand, 3438394 - 3438258
Alignment:
Q  290 caatagacgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtt 389  Q
    ||||||| |||||||||||||| ||||||||||| |||||||| || ||||  |||||||  |||| |||||  ||||| |||| ||| |||||||||||    
T  3438394 caatagatgtgcattccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtt 3438295  T
Q  390 tatagacaccagatcaacaagaagcaaagacaacttg 426  Q
    ||||||||||| |||| || ||| ||  |||||||||    
T  3438294 tatagacaccaaatcaccatgaaacatggacaacttg 3438258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 424
Target Start/End: Complemental strand, 55908457 - 55908336
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccaga 402  Q
    ||||||||||| |||| |||| |||||||| || ||||| |||| || || ||   | || ||||| ||  ||||||||||||||||||||||||||| |    
T  55908457 ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 55908358  T
Q  403 tcaacaagaagcaaagacaact 424  Q
    ||| |||||| |||||||||||    
T  55908357 tcaccaagaaacaaagacaact 55908336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 53761517 - 53761398
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccaga 402  Q
    ||||||||||||||||||||| |||||||||||| || |||||| || |||||  ||||  ||||   |   |||   |||||||||||| ||||||| |    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttagcaagtgcaaacaaggccaattttgtgatcttataacaacgactaaggtttatggacaccaaa 53761418  T
Q  403 tcaacaagaagcaaagacaa 422  Q
    ||| ||||||||||||||||    
T  53761417 tcaccaagaagcaaagacaa 53761398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 400
Target Start/End: Complemental strand, 6602937 - 6602840
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacacca 400  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||    | ||||||||||||||||||||||||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataattctgtgaggtaggaacattcactaaggtttatagacacca 6602840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 7993919 - 7993793
Alignment:
Q  298 gtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagaca 397  Q
    |||| |||||||||||| |||| ||| || |||||||||||||| ||||||| ||||| | |||| ||||| |||  |||||||||||||||||||||||    
T  7993919 gtgcgttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagaca 7993820  T
Q  398 ccagatcaacaagaagcaaagacaact 424  Q
    ||| |||| ||||||| || |||||||    
T  7993819 ccaaatcaccaagaagtaatgacaact 7993793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 7131983 - 7132078
Alignment:
Q  302 attccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagaca 397  Q
    |||||||||||| ||||||||| ||||| ||||||||||| ||||||  ||||| |||||| ||||| |||  ||| |||| |||||||| |||||    
T  7131983 attccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagcatccaacagtcacgaaggtttacagaca 7132078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 19632785 - 19632887
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccaga 402  Q
    ||||||||||||||||||||| |||||||| || ||||| || |||| ||| |||||||| |||||  ||  ||| ||| ||||||| |||||||||| |    
T  19632785 ttccattttgatctcactaagtgaaggacaattactaacgagcgaaaacaatgataattctgtgagcttccaacagtcattaaggttgatagacaccaaa 19632884  T
Q  403 tca 405  Q
    |||    
T  19632885 tca 19632887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 6426855 - 6426906
Alignment:
Q  298 gtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaa 349  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||||||    
T  6426855 gtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaa 6426906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 6594505 - 6594411
Alignment:
Q  141 ctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagactt 235  Q
    |||||||| |||| ||||||  |||||||||| |||| |||||  | ||||||||||||| ||||  ||| ||||  ||||||||||||||||||    
T  6594505 ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatctttcaagtgctcacagcgagccaaacaaagagactt 6594411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 6432512 - 6432635
Alignment:
Q  290 caatagacgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgaga-atcgtacattcactaaggt 388  Q
    ||||||| |||| ||||||||||||||||       |||||||||||| ||| ||||||| || || | |||| |||||| |||| ||| | ||||||||    
T  6432512 caatagaggtgcgttccattttgatctca-------aaggacagtttccaacgagtgaaaacagggctgattctgtgagatatcg-acaattactaaggt 6432603  T
Q  389 ttatagacaccagatcaacaagaagcaaagac 420  Q
    |||||||||||| |||| |||||| |||||||    
T  6432604 ttatagacaccaaatcagcaagaaacaaagac 6432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 8913723 - 8913678
Alignment:
Q  381 actaaggtttatagacaccagatcaacaagaagcaaagacaacttg 426  Q
    |||||||||||||||||||| || | |||||| |||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttg 8913678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 10579487 - 10579435
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaagg 355  Q
    ||||||||||||||||||||| |||||||| ||||| || || |||| |||||    
T  10579487 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaagg 10579435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 29718994 - 29718792
Alignment:
Q  38 gagtgatttatcatcaacatctgtgtatgacaagttcatatgcttaagattatgaca---tcttaatactagaccaacaatttcctcacacatgcccttc 134  Q
    |||||||||||||||||| |  || ||||||||||||| ||||||||  |||  |||   |||||| |||  |  |||| |||| ||| |||   |||||    
T  29718994 gagtgatttatcatcaacgttggtatatgacaagttcaaatgcttaatcttagtacaacatcttaaaactttagaaacagtttcttcagacacttccttc 29718895  T
Q  135 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact 234  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||  |  ||||||| |||||||||    | ||||  |||||||||||||||||    
T  29718894 caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaagagact 29718795  T
Q  235 tta 237  Q
    |||    
T  29718794 tta 29718792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 29658872 - 29658765
Alignment:
Q  130 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 229  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||  | |||||||| |||||||||    | ||||  ||||||||||||    
T  29658872 ccttccaatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctctcaagtattgacagcgagccaaacaaag 29658773  T
Q  230 agacttta 237  Q
    ||||||||    
T  29658772 agacttta 29658765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 29691387 - 29691280
Alignment:
Q  130 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 229  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |  ||||||| |||||||||    | ||||  ||||||||||||    
T  29691387 ccttccaatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaag 29691288  T
Q  230 agacttta 237  Q
    ||||||||    
T  29691287 agacttta 29691280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 298 - 424
Target Start/End: Original strand, 33160869 - 33160995
Alignment:
Q  298 gtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagaca 397  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||| | | |||| |||||  ||  |||| || |||||||||||||||    
T  33160869 gtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagaca 33160968  T
Q  398 ccagatcaacaagaagcaaagacaact 424  Q
    ||| | || |||||| |||||| ||||    
T  33160969 ccaaagcagcaagaaacaaagagaact 33160995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 33160696 - 33160803
Alignment:
Q  130 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 229  Q
    ||||| ||||||||||||| ||||||||||| |||||||| ||| ||| |||||  | ||||||||||||||||||  ||| |||||  |||||| ||||    
T  33160696 ccttcgaatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaag 33160795  T
Q  230 agacttta 237  Q
    ||||||||    
T  33160796 agacttta 33160803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 19468237 - 19468115
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccaga 402  Q
    ||||||||||||||||||||| |||||||| || ||||| |||| || ||||| | | |  |||||   | ||||||||||||||||||||||||| | |    
T  19468237 ttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgaggtccatacattcactaaggtttatagacactaaa 19468138  T
Q  403 tcaacaagaagcaaagacaactt 425  Q
    ||| |||||| ||||||||||||    
T  19468137 tcaccaagaaacaaagacaactt 19468115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 30827304 - 30827374
Alignment:
Q  135 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaa 205  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||  | ||||||||||||||||||    
T  30827304 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaa 30827374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 423
Target Start/End: Original strand, 52093167 - 52093264
Alignment:
Q  326 aaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccagatcaacaagaagcaaagacaac 423  Q
    |||||||||| ||||| ||||| | ||||| ||||||||||| | | |||||    ||||||||||||||||||| || | |||||| ||||||||||    
T  52093167 aaggacagttcctaactagtgacaccaaggttaattcagtgatattggtacaagggctaaggtttatagacaccaaattaccaagaaccaaagacaac 52093264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 424
Target Start/End: Complemental strand, 29658686 - 29658564
Alignment:
Q  302 attccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccag 401  Q
    ||||||||||||| |||||||| |||||||| ||| |||| || |||| ||| | | |||| || ||  ||  |||| || ||||||||||||||||||     
T  29658686 attccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttatagacaccaa 29658587  T
Q  402 atcaacaagaagcaaagacaact 424  Q
    || | |||||| |||||| ||||    
T  29658586 atgagcaagaaacaaagagaact 29658564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 424
Target Start/End: Complemental strand, 29691201 - 29691079
Alignment:
Q  302 attccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccag 401  Q
    ||||||||||||| |||||||| |||||||| ||| |||| || |||| ||| | | |||| || ||  ||  |||| || ||||||||||||||||||     
T  29691201 attccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttatagacaccaa 29691102  T
Q  402 atcaacaagaagcaaagacaact 424  Q
    || | |||||| |||||| ||||    
T  29691101 atgagcaagaaacaaagagaact 29691079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 424
Target Start/End: Complemental strand, 29718713 - 29718591
Alignment:
Q  302 attccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccag 401  Q
    ||||||||||||| |||||||| |||||||| ||| |||| || |||| ||| | | |||| || ||  ||  |||| || ||||||||||||||||||     
T  29718713 attccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttatagacaccaa 29718614  T
Q  402 atcaacaagaagcaaagacaact 424  Q
    || | |||||| |||||| ||||    
T  29718613 atgagcaagaaacaaagagaact 29718591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 52082947 - 52083015
Alignment:
Q  299 tgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtga 367  Q
    ||||||||||| ||||||  || ||  |||||||||| ||||| ||||| ||||||| |||||||||||    
T  52082947 tgcattccattatgatcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtga 52083015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 17205597 - 17205660
Alignment:
Q  8 aagcaaaggaaaacactttgagatgagacagagtgatttatcatcaacatctgtgtatgacaag 71  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  17205597 aagcataggaaaacacttttagatgatacagagtgatttatcatcaacatctgtgtatgacaag 17205660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 20477825 - 20477717
Alignment:
Q  292 atagacgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggttta 391  Q
    ||||| ||| |||||||||||||||||| ||| ||||||||||||||||| ||||||  ||||| |||||| ||||||  |  ||| |||||||| ||||    
T  20477825 atagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtgagatgcaaacaatcactaagattta 20477726  T
Q  392 tagacacca 400  Q
    |||||||||    
T  20477725 tagacacca 20477717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 424
Target Start/End: Complemental strand, 1037393 - 1037272
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccaga 402  Q
    ||||||||||| |||| |||| |||||||| || ||||| |||| || || ||   | || ||||| ||  ||||||||||||||||||||||||||| |    
T  1037393 ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 1037294  T
Q  403 tcaacaagaagcaaagacaact 424  Q
    ||| |||||| |||||||||||    
T  1037293 tcaccaagaaacaaagacaact 1037272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 17627801 - 17627691
Alignment:
Q  290 caatagacgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtt 389  Q
    ||||||| |||||||||||||| |||||| |||| |||||||| || ||||| ||||||| ||||| | ||||   ||| |||  ||| | |||||||||    
T  17627801 caatagatgtgcattccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtt 17627702  T
Q  390 tatagacacca 400  Q
    || ||||||||    
T  17627701 tacagacacca 17627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 424
Target Start/End: Original strand, 287 - 408
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagacaccaga 402  Q
    |||||||||||||||| |||| |||||| | || ||||| |||| || || || | | |  ||||| ||  ||||||||||||| ||||||||||||| |    
T  287 ttccattttgatctcaataagtgaaggataattcctaacgagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaa 386  T
Q  403 tcaacaagaagcaaagacaact 424  Q
    ||  |||||| |||||||||||    
T  387 tcgccaagaaacaaagacaact 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 514454 - 514401
Alignment:
Q  306 cattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataa 359  Q
    |||||||||||||||||| |||||||||||  ||||||||| || |||||||||    
T  514454 cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaaggataa 514401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 15091889 - 15091786
Alignment:
Q  297 cgtgcattccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggataattcagtgagaatcgtacattcactaaggtttatagac 396  Q
    |||||||| ||||||||| ||| |||| ||||||||||||||| | ||||||| ||||| |  ||| |||||| |   |||  || ||||||||||||||    
T  15091889 cgtgcatttcattttgatttcaataagcgaaggacagtttctaccgagtgaaaacaaggttgtttctgtgagattacgacaagcattaaggtttatagac 15091790  T
Q  397 acca 400  Q
    ||||    
T  15091789 acca 15091786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 10169868 - 10169814
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggat 357  Q
    ||||||||||||||||||||| |||||||| || ||||| |||| || |||||||    
T  10169868 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggat 10169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 10177393 - 10177339
Alignment:
Q  303 ttccattttgatctcactaagagaaggacagtttctaacaagtgaaagcaaggat 357  Q
    ||||||||||||||||||||| |||||||| || ||||| |||| || |||||||    
T  10177393 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggat 10177339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University