View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917_low_7 (Length: 430)
Name: NF9917_low_7
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 213 - 414
Target Start/End: Complemental strand, 37865867 - 37865666
Alignment:
| Q |
213 |
ttcataaaggttttagttgattggccaatttagaacaaccgcaaagaagtaagggtggattaatctaaataatacattcaagagcatttgatctatatat |
312 |
Q |
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| T |
37865867 |
ttcataaaggttttaattgattggccaatttagaacaaccgcaaagaagtaagggtggattaatctaaataatacattcaagagcatttgatctatatat |
37865768 |
T |
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| Q |
313 |
gtttaggaaattgacctagctttcaaaagtttgtgtaagacgcatatattcttgtccccttccttttatttcccttctcatattcctttcataattcatt |
412 |
Q |
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| T |
37865767 |
gtttaggaaattgacctagctttcaaaagtttgtgtaagacgcatatattcttgtccccttccttttatttcccttctcatattcctttcataattcatt |
37865668 |
T |
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| Q |
413 |
cg |
414 |
Q |
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| T |
37865667 |
cg |
37865666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 37866126 - 37865936
Alignment:
| Q |
27 |
ttgtagcactagctagcacggtcaatactcaaaactcaacttattaagtaatgttgcgttttattaacattttagactgattcatgcaagagaatccatt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37866126 |
ttgtagcactagctagcacggtcaatactcaaaactcaacttattaagtaatgttgcgttttattaacattttagactgattcatgcaagagaatccatt |
37866027 |
T |
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| Q |
127 |
gcctttcttcctctaaagaca-aaaatatgccttagttaaacgatatataaaatattagcaaaaaataacgatacataaattaacatttca |
216 |
Q |
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| T |
37866026 |
gcctttcttcctctaaagacaaaaaatatgccttagttaaacgatacataaaatattagcaaaaaataacgatacataaattaacatttca |
37865936 |
T |
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