View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917_low_8 (Length: 375)
Name: NF9917_low_8
Description: NF9917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 37790833 - 37790716
Alignment:
| Q |
181 |
ttcaaatatgtcttcaacgaggatttttcacgaacaca---ttattggcaataacttgacttcccaaattatccaaaagaaccaatagagttctttacaa |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37790833 |
ttcaaatatgtcttcaacgaggatttttcacaaacacaatattattggcaataacttgacttcccaaattatccaaaagaaccaatagagttctttacaa |
37790734 |
T |
|
| Q |
278 |
atctactaacttacaaac |
295 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37790733 |
atctactaacttacaaac |
37790716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 262 - 357
Target Start/End: Complemental strand, 37790712 - 37790618
Alignment:
| Q |
262 |
atagagttctttacaaatctactaacttacaaacataaagaggccaatagtataagctcaatcttattatctaacaattggttcagccaagtcatc |
357 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37790712 |
atagagttcttta-aaatctactaacttacaaacataaagaggccaatagcataagctcaatcttattatctaacaattggttcagccaagtcatc |
37790618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University