View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_1 (Length: 800)
Name: NF9918_high_1
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 747; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 11 - 785
Target Start/End: Complemental strand, 32163481 - 32162707
Alignment:
| Q |
11 |
aagcagagagcaaacttgcaagagtaactgaatttggcaaaatcctataccatttcttatcggtaaacaactccaacgcagcttgaggataacctctctg |
110 |
Q |
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| T |
32163481 |
aagcagagagcaaacttgcaagagtaactgaatttggcaaaatcctataccatttcttatcggtaaacaactccaacgcagcttgaggataacctctctg |
32163382 |
T |
|
| Q |
111 |
agtatacccaacaatcatagccgtccaaaaaacaagatcgtcaccaccaccacaagtcgaaactgaaaattcatcaaacacggaacgagcatcaccaata |
210 |
Q |
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| T |
32163381 |
agtatacccgacaatcatagccgtccaaaaaacaagatcgtcaccaccaccacaagtcgaaactgaaaattcatcaaacacggaacgagcatcaccaata |
32163282 |
T |
|
| Q |
211 |
tcaccacatttaacatacatattcaaaagagaagtagccaaataagaattaatctcaatcccattcttaataacatacccatgaacccatttcccttgat |
310 |
Q |
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| T |
32163281 |
tcaccacatttaacatacatattcaaaagagaagtagccaaataagaattaatctcaatcccattcttaataacatacccatgaacccatttcccttgat |
32163182 |
T |
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| Q |
311 |
gcaaacaccctaatttagtacacgccgtaaccaaactcccaacagtaaacacattcccatcaacaaacccttccctcattctattaaacaacatcaaccc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32163181 |
gcaaacaccctaatttagtacacgccgtaaccaaactcccaacagtaaacacattcccatcaagaaacccttccctcattctattaaacaacatcaaccc |
32163082 |
T |
|
| Q |
411 |
ttcctcagcacattcattttgaacataagcaacaatcatcgaagtccatgacaccacacttctatcaggtatttcatcaaacacctttcgtgcatccctt |
510 |
Q |
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| T |
32163081 |
ttcctcagcacattcattttgaacataagcaacaatcatcgaagtccacgacaccacacttctatcaggtatttcatcaaacacctttcgtgcatccctt |
32162982 |
T |
|
| Q |
511 |
agtttcccacatttcgaataagcatcaactaaactagtcaaaacaaaactatcagcagcatttgctttgagaatgttacaatgaagctttgtagtaagaa |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
32162981 |
agtttcccacatttcgaataagcatcaactaaactagtcaaaacaaaactatcagcagcatttgatttgagaatgttacagtgaagctttgtagtaagaa |
32162882 |
T |
|
| Q |
611 |
caatatcacgtaattgagacgctgttttaagcagaatggagaaaacgacgaggtcgttgaaggaaccgagagtggttcgcgcaaggttgtagaatgaaac |
710 |
Q |
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| T |
32162881 |
caatatcacgtaattgagacgctgttttaagcagaatggagaaaacgacgaggtcgttgaaggaaccgagagtggttcgcgcaaggttgtagaatgaaac |
32162782 |
T |
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| Q |
711 |
gacgtgggagtggatgtcgttaaggaaatgccaacgaatgatgagtttgaaggagtggtgggttggtgagggaag |
785 |
Q |
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| T |
32162781 |
gacgtgggagtggacgtcgttgaggaaatgccaacgaatgatgagtttgaaggagtggtgggttggtgagggaag |
32162707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 42761176 - 42761122
Alignment:
| Q |
178 |
aattcatcaaacacggaacgagcatcaccaatatcaccacatttaacatacatat |
232 |
Q |
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|||||||||||||| ||||||||||||||| ||||| |||||| ||||||||| |
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| T |
42761176 |
aattcatcaaacaccttacgagcatcaccaatctcaccgcatttaccatacatat |
42761122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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