View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_11 (Length: 345)
Name: NF9918_high_11
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 42029484 - 42029161
Alignment:
| Q |
7 |
tttggaggtaggacgatattaagatttnnnnnnnnnntgtaattgtattgttataaatagtttaaaaatctaacaatattaatatattatatgtacgtgc |
106 |
Q |
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| T |
42029484 |
tttggaggtaggacgatattaagatttaaaaaaaaa-tgtaattgtattgttataaatagtttaaaaatctaacaatattaatatattatatatacgtgc |
42029386 |
T |
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| Q |
107 |
gaacaaatagtagacttaagtgattaatgaattttaactaagaacgagtcatctgaaggaactcaagttctctaattcgtagaaatagttattgattagg |
206 |
Q |
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| T |
42029385 |
gagcaaatagtagacttaagtgattaatggattttaactaagaacgagccgtctgaaggaactcaagttctctaattcgtagaaatagttattgattaag |
42029286 |
T |
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| Q |
207 |
ttttatttatctttcaaccaaactctaaattatcacaatattattcccttaaaacaaaaagttgatatgtcaattttttaatgacaatttttattgatta |
306 |
Q |
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| T |
42029285 |
ttttatttatctttcaaccaaactctaaattatcacaatattattcccttaaaacaaaaaattgatatgtcaattttttaatgacaatttttattgatta |
42029186 |
T |
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| Q |
307 |
attataatggaaaacgatagaagtg |
331 |
Q |
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| T |
42029185 |
attataatggaaaacgatacaagtg |
42029161 |
T |
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