View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_14 (Length: 315)
Name: NF9918_high_14
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 37338233 - 37338066
Alignment:
| Q |
18 |
gaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaatttgtaaaaacagcaa |
117 |
Q |
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| T |
37338233 |
gaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaatttataaaaacagcaa |
37338134 |
T |
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| Q |
118 |
atacaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
185 |
Q |
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| T |
37338133 |
atacaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
37338066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 11299946 - 11300106
Alignment:
| Q |
20 |
aggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaatttgtaaaaacagcaaat |
119 |
Q |
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| T |
11299946 |
aggagctacaaaaactggattttgggtcaga-----caaacttcttcaaagacaaacttctccacagaaatctgaaactaaatttgtaaaaacagcaaat |
11300040 |
T |
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| Q |
120 |
acaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
185 |
Q |
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| T |
11300041 |
acaattaaggaaaccatgtacacgtgaccattacgtgataggctgtctacacagacgcacgacttg |
11300106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 37337985 - 37337942
Alignment:
| Q |
266 |
ccacacaatcaacttcacaatctatggtgtacgtcctatgcttc |
309 |
Q |
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| T |
37337985 |
ccacacaatcaacttcacaatctatggtgtacgtcctatacttc |
37337942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 11300187 - 11300223
Alignment:
| Q |
266 |
ccacacaatcaacttcacaatctatggtgtacgtcct |
302 |
Q |
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| T |
11300187 |
ccacacaatcaacttcgcaatctatggtgtacgtcct |
11300223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 47967880 - 47968015
Alignment:
| Q |
20 |
aggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaatttgtaaaaacagcaaat |
119 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47967880 |
aggagctacagaaactggattttgggtcggataagacaaacttcttcacagacaaacttctccacagaaatctgaaactaaatttgtaaaaacagcaaat |
47967979 |
T |
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| Q |
120 |
acaattaagggaaccatgtacatgtgaccattacgt |
155 |
Q |
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| T |
47967980 |
acaattaagggaaccatgtacatgtgaccattacgt |
47968015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 15297047 - 15296897
Alignment:
| Q |
18 |
gaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaatttgtaaaaacagcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
15297047 |
gaaggagctacagaaactggactttgggtcagataagacaaacttct----------------ccacagaaatctgaatctaaatttgtaaaaacagcaa |
15296964 |
T |
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| Q |
118 |
atacaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
15296963 |
atacaattaagggaaccatgtacatgtgaccattacgtgatagg-tgtctacaaagacgtacgacttg |
15296897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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