View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_15 (Length: 311)
Name: NF9918_high_15
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 48258582 - 48258871
Alignment:
| Q |
1 |
aaaagatttggaagaaattatggaatctccacactatacctaagcacaaagatttcctatgacacattcttaacgactctatgcatgtcatgagtgagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48258582 |
aaaagatttggaagaaattatggaatctccacactatacctaagcacaaagatttcccatgacacattcttaaagactctatgcatgtcatgagtgagtt |
48258681 |
T |
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| Q |
101 |
aaatcataaaggcttggccggagacgttttatgccctagatgtgccaataaagtggaaattgtgaactatctttacatggaaggtgattttggtatgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48258682 |
aaatcataaaggcttggccggagacgttttatgccctagatgtgccaataaagtggaaattgtgaactatctttacatggaaggtgattttggtatgaag |
48258781 |
T |
|
| Q |
201 |
gcttggtttggatctacctttggtattcaattcctaaatatcattatgtgtgatttcatacactagctgagacagattattggcagtttg |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48258782 |
gcttggtttggatctacctttggtattcaattcctaaatatcattatgtgtgatttcatacactagccgagacagattattggcagtttg |
48258871 |
T |
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