View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_2 (Length: 696)
Name: NF9918_high_2
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 18 - 684
Target Start/End: Complemental strand, 10842865 - 10842197
Alignment:
| Q |
18 |
gttcttctgacatccgacttaaatcatggtccaattgggagacttgagctttgagatttttggtagtgtttttgcannnnnnngagacaaactttaaaaa |
117 |
Q |
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| T |
10842865 |
gttcttctaacatccgacttaaatcatggtccaattgggagacttgagctttgagatttttggtagtgtttttgcatttttttgagacaaactttaaaaa |
10842766 |
T |
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| Q |
118 |
atttatctgcataatcttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaatttagaacttcctcaacttgagttgaag |
217 |
Q |
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| T |
10842765 |
atttatctgcataatcttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaatttagaacttcctcaacttgagttgaag |
10842666 |
T |
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| Q |
218 |
gtttaagttttccatcagactaaacttcatttggttgtatgaaaggtttggatgatctgttagtgatggggtcgatttttctttctagagcagggaaatg |
317 |
Q |
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| T |
10842665 |
gattaagttttccatcagactaaacttcatttggttgtataaaaggtttggatgatctgttagtgatggggtcgatttttctttctagagcagggaaatg |
10842566 |
T |
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| Q |
318 |
ttggttataatttgaagctgagaacatgattcaagggattggttcagtgnnnnnnncttataaattcctatccatgcaccattattagggtcaaattttc |
417 |
Q |
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| T |
10842565 |
ttggttacaatttgaagctgagaacatgattcaagggattggttcagtgtttttttcttataaattcctatccatgcaccattattagggtcaaattttc |
10842466 |
T |
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| Q |
418 |
tctgtggtggatgagatggtctacacacccatttcttcttcttttaagggaggataatttctctatcaatttcatcatcatgcatccattagtcacacca |
517 |
Q |
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| T |
10842465 |
tctgtggtggatgagatggtctacacacccatttcttcttcttttaagggaggataatttctctatcaatttcatcatcatgcatccattagtcacacca |
10842366 |
T |
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| Q |
518 |
ttggtcgcacatattgggatctacatcccaaacaaaatggccatatactttgtcagtatagataggcttgcc--agtgacaacataaataggacaccaac |
615 |
Q |
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| T |
10842365 |
tcggtcgcacatattgggatctacatcccaaacaaaatggccatatactttgtcagtatagataggcttgccttagtgacaacataaataggacaccaat |
10842266 |
T |
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| Q |
616 |
cttcttcaattattggttgtatgatcatggtttgaaaaatatgataagccaaacttggtccattatctg |
684 |
Q |
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| T |
10842265 |
cttcttcaattattggttgtatgatcatggtttgaaaaatatgataagccaaacttggcccattatctg |
10842197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 289
Target Start/End: Complemental strand, 12347971 - 12347817
Alignment:
| Q |
134 |
ttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaatttagaacttcctcaacttgagttgaaggtttaagttttccatc |
233 |
Q |
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| T |
12347971 |
ttttgtcaagattttggagaatatccttttgagcaaccatattctcagactgccaatttaaaacctcttcagcttgggttaacggtttaagttttc-atc |
12347873 |
T |
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| Q |
234 |
agactaaacttcatttggttgtatgaaaggtttggatgatctgttagtgatggggt |
289 |
Q |
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| T |
12347872 |
tggctggacttcatttggttgtatgattggtttggatgatctgtttgtgattgggt |
12347817 |
T |
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