View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_25 (Length: 249)
Name: NF9918_high_25
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 37740102 - 37740345
Alignment:
| Q |
1 |
atgttatttattgttttcggtgtttgttgtcataatcttaacaggaggccacgattacactctgaacagcattgatagatttcacaatgaatgctttgaa |
100 |
Q |
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| T |
37740102 |
atgttatttattgttttcagtgtttgttgtcataatcttaacaggaggccacgattacactctgaacagcattgatagatttcacaatgagtgctttgaa |
37740201 |
T |
|
| Q |
101 |
tccagccattttgatcacatattcccattctttgagtgtcctttctttgccaatgtttgtgtgtgccatcatcaccatgtctaacattaaccctacgtct |
200 |
Q |
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| T |
37740202 |
tccagccattttgatcacatattcccattctttgagtgtcctttctttgccaatgtttgtgtgtgccatcatcaccatgtctaacattaaccctacgtct |
37740301 |
T |
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| Q |
201 |
ttatacttgttgtgttttccttctccttcttcaatctctgcttc |
244 |
Q |
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| T |
37740302 |
ttatacttgttgtgttttccttctccttcttcaatcactgcttc |
37740345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 8679372 - 8679516
Alignment:
| Q |
66 |
acagcattgatagatttcacaatgaatgctttgaatccagccattttgatcacatattcccattctttgagtgtcctttctttgccaatgtttgtgtgtg |
165 |
Q |
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||||||||||||||||||||| || || | || ||||||||||||||||||||||||||||| ||||| || || | |||||||||| ||| ||||||| |
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| T |
8679372 |
acagcattgatagatttcacagtgcatcccttaaatccagccattttgatcacatattcccactctttcagggtacgttctttgccatagttagtgtgtg |
8679471 |
T |
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| Q |
166 |
ccatcatcaccatgtctaacattaaccctacgtctttatacttgt |
210 |
Q |
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| T |
8679472 |
ccatcatcaccatgtctaacactaaccctacatctttatacttgt |
8679516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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