View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_3 (Length: 634)
Name: NF9918_high_3
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 46 - 617
Target Start/End: Original strand, 39166215 - 39166786
Alignment:
| Q |
46 |
gtcaagtaatgaatgacgaaatgaaacgaaccaagtcaattttagcaataaaattctgaaggaaaacaaaccaaaaatactcatttagatcatcatagtt |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166215 |
gtcaagtaatgaatgacgaaatgaaacgaaccaagtcaattttagcaataaaattctgaaggaaaacaaaccaaaaatactcatttagatcatcatagtt |
39166314 |
T |
|
| Q |
146 |
ggaccatgctgagtgtgcagcctttccatttctgcttttcttagattcctggaatgatcaacatggttattacaattttgcaaatcattacagggaacat |
245 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166315 |
ggaccatgctgagtgtgaagcctttccatttctgcttttcttagattcctggaatgatcaacatggttattacaattttgcaaatcattacagggaacat |
39166414 |
T |
|
| Q |
246 |
aggcacctgagatattacaacaatgtccatgtgagataaaatcacaccttctcaattactcggtataggggtgtgataacctttcgtaggaatgcctcgt |
345 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39166415 |
aggcacctgagatattacaacaatgtccatgtgaaataaaatcacaccttctcaattactcggtatatgggtgtgataacctttcgtaggaatgcctcgt |
39166514 |
T |
|
| Q |
346 |
catctccaccataagaaggcttgatattttcaccagtgacaatgctgacatttccagccaataaaccatgcagttcatatgccatctgatgtcatacttg |
445 |
Q |
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| T |
39166515 |
catctccaccataagaaggcttgatattttcaccagtgacaatgctgacatttccagccaataaaccatgcagttcatatgccatctgatgtcatacttg |
39166614 |
T |
|
| Q |
446 |
gccattattagcaaatgtgcaaatgactaataaatttaaaaagattaaagagaagaccattatatttcaattgcgaagacattgtggcacaagatatagt |
545 |
Q |
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| T |
39166615 |
gccattattagcaaatgtgcaaatgactaataaatttaaaaagattaaagagaagaccattatatttcaattgcaaagacattgtggcacaagatatagt |
39166714 |
T |
|
| Q |
546 |
gaaacatgtggtatatttgtactcacattgtgaaatatatagcacagacactctggcatgaatcgaacattt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166715 |
gaaacatgtggtatatttgtactcacattgtgaaatatatagcacagacactctggcatgaatcgaacattt |
39166786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 5539091 - 5539224
Alignment:
| Q |
46 |
gtcaagtaatgaatgacgaaatgaaacgaaccaagtcaattttagcaataaaattctgaaggaaaacaaaccaaaaatactcatttagatcatcatagtt |
145 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5539091 |
gtcaagtaatgcatgatgaaatgaaacaaaccaagtcaattttagtaataaaattctgaaggaaaacaaaccaaaaatactcatttagatcatcatagtt |
5539190 |
T |
|
| Q |
146 |
ggaccatgctgagtgtgcagcctttccatttctg |
179 |
Q |
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| T |
5539191 |
gcaccatgctgagtgtgaagcctttccatttctg |
5539224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 43963990 - 43964103
Alignment:
| Q |
321 |
ataacctttcgtaggaatgcctcgtcatctccaccataagaaggcttgatattttcaccagtgacaatgctgacatttccagccaataaaccatgcagtt |
420 |
Q |
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|||||||| || | ||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
43963990 |
ataaccttgcgcaagaatgcctcatcatcaccaccataagaaggtttgatattttcaccagtaacaatgctgacatttccagccaataaaccatgaagtt |
43964089 |
T |
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| Q |
421 |
catatgccatctga |
434 |
Q |
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| T |
43964090 |
catatgccatctga |
43964103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 43963781 - 43963868
Alignment:
| Q |
109 |
aaacaaaccaaaaatactcatttagatcatcatagttggaccatgctgagtgtgcagcctttccatttctgcttttcttagattcctg |
196 |
Q |
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|||| ||||| |||||||||||||||||||| || ||| |||| |||||||| | |||| |||||||||||||||||| || |||||| |
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| T |
43963781 |
aaactaaccagaaatactcatttagatcatcgtaattgcaccaggctgagtgaggagccattccatttctgcttttctcagcttcctg |
43963868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 612
Target Start/End: Original strand, 43964218 - 43964263
Alignment:
| Q |
567 |
ctcacattgtgaaatatatagcacagacactctggcatgaatcgaa |
612 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||| |||| |
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| T |
43964218 |
ctcacattgtgaaatatgtagcatatacactctggcatgaagcgaa |
43964263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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