View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_high_5 (Length: 453)
Name: NF9918_high_5
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 1755471 - 1755882
Alignment:
| Q |
19 |
ggtgtaatctgtaattataccatttaagtagagtaactaggaaatcctatcatggttgcagacctcatgtaagcaggacaggtaattagttattgtgatc |
118 |
Q |
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| T |
1755471 |
ggtgtaatctgtaattataccatttaagtagagtaactaggaaatcctatcatggttgcagacctcatgtaagcaggacaggtaattagttattgtgatc |
1755570 |
T |
|
| Q |
119 |
atagaagggtgattaacaccatatcaggaaaatatgttgtgttccatgttcagatgaaggcaaacattgaaataaaattggacagtagtaactattgtta |
218 |
Q |
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| T |
1755571 |
atagaagggtgattaacaccatatcaggaaaatatgttgtgttccatgttcagatgaaggcaaacattgaaataaaattggacagtagtaattattgtta |
1755670 |
T |
|
| Q |
219 |
tgaaatctgtttttcaaaagaattactgcacttagtccctatcaaaatctgataactgatacatattaactcaaatttgattacaataatgataatgttg |
318 |
Q |
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| T |
1755671 |
tgaaatctgtttttcaaaagaattactgcacttagtccctatcaaaatctgataactgatacatattaactcaaatttgattacaataatgataatgttg |
1755770 |
T |
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| Q |
319 |
tatatattaaaattcttggcacttggc-aaaagctagaaatgattttacaatggcttgtcatgtcactattctcattctggcaacatttttccatacaac |
417 |
Q |
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| T |
1755771 |
tatatattaaaattcttggcacttggcaaaaagctagaaatga-----------catgtca---caatattctcattctggcaacatttttccatacaac |
1755856 |
T |
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| Q |
418 |
aaagaagaaaaatgaaaagttaacacca |
445 |
Q |
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| T |
1755857 |
--agaagaaaaatgaaaagttatcacca |
1755882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 170 - 445
Target Start/End: Original strand, 18985518 - 18985774
Alignment:
| Q |
170 |
agatgaaggcaaacattgaaataaaattggacagtagtaactattgttatgaaatctgtttttcaaaagaattactgcacttagtccctatcaaaatctg |
269 |
Q |
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|||| |||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
18985518 |
agatcaaggtaaacattgaaatacaattagacagtagtaataattgttatgaaatctgtttttcaaaagaattactgcacttcgt--------------- |
18985602 |
T |
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| Q |
270 |
ataactgatacatattaactcaaatttgattacaataatgataatgttgtatatattaaaattcttggcacttggcaaaagctagaaatgattttacaat |
369 |
Q |
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| T |
18985603 |
------gatacatattaactcgaattttattacagtaatgataatgttgtgtatattaaaattctaggcacttggcaaaagctagaaatgattttacaat |
18985696 |
T |
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| Q |
370 |
ggcttgtcatgtcac--tattctcattctggcaacatttttccatacaacaaagaagaaaaatgaaaagttaacacca |
445 |
Q |
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| T |
18985697 |
gtcttgtcatgtcacaatattctcattctggtaacatttttccatacaaaaaagaagcaaaatgaaaagttatcacca |
18985774 |
T |
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