View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9918_high_9 (Length: 369)

Name: NF9918_high_9
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9918_high_9
NF9918_high_9
[»] chr3 (3 HSPs)
chr3 (1-354)||(35707425-35707778)
chr3 (3-353)||(35723387-35723736)
chr3 (3-256)||(35726887-35727137)
[»] chr8 (1 HSPs)
chr8 (35-240)||(22512836-22513041)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 35707778 - 35707425
Alignment:
Q  1 tcgcaagcctccaaagccaaagattggaggaatgatcagaactaggtgtgaaaacttgcttccattgtgcctttccatcaataggtggtctagtgagctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35707778 tcgcaagcctccaaagccaaagattggaggaatgatcagaactaggtgtgaaaacttgcttccattgtgcctttccatcaataggtggtctagtgagctc 35707679  T
Q  101 aatagctagtggcttcaatattccttcactagtaaggaagaatagtgttcttgatccatatagtgttgttccctcaatctctctcactttgcttacatat 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35707678 aatagctagtggcttcaatattccttcagtagtaaggaagaatagtgttcttgatccatatagtgttgttccctcaatctttctcactttgcttacatat 35707579  T
Q  201 ggtatgtagaaatcatgatagtctagcatgaacaacttcttctcttcaatagcctgtagtattgaattaaataattttttcagcattatacattattaat 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35707578 ggtatgtagaaatcataatagtctagcatgaacaacttcttctcttcaatagcctgtagtattgaattaaataattttttcagcattatacattattaat 35707479  T
Q  301 ttagtnnnnnnnncattgttgctcttgttacctcttcaactgtgctataatttt 354  Q
    |||||        |||||||||||||||||||||||||||||||||||||||||    
T  35707478 ttagtaaaaaaaacattgttgctcttgttacctcttcaactgtgctataatttt 35707425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 353
Target Start/End: Complemental strand, 35723736 - 35723387
Alignment:
Q  3 gcaagcctccaaagccaaagattggaggaatgatcagaactaggtgtgaaaacttgcttccattgtgcctttccatcaataggtggtctagtgagctcaa 102  Q
    ||||||||||||||||| | ||||| |||||   ||||| |||||||||| ||||||||||| |||| ||| |||||||||||||||||||| |||||||    
T  35723736 gcaagcctccaaagccagatattggtggaat---cagaattaggtgtgaagacttgcttccactgtgacttgccatcaataggtggtctagtaagctcaa 35723640  T
Q  103 tagctagtggcttcaatattccttcactagtaaggaagaatagtgttcttgatccatatagtgttgttccctcaatctctctcactttgcttacatatgg 202  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  35723639 tagctagtggcttcaaaatgccttcactagtgaggaagaatagtgttcttgatccatacaatgttgttccctcaatctctctcactttgcttacatatgg 35723540  T
Q  203 tatgtagaaatcatgatagtctagcatgaacaacttcttctcttcaatagcctgtagtattgaattaaataatt--ttttcagcattatacattattaat 300  Q
    || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  35723539 taagtaaaaatcatgatagtctagcatgaacaacttcttctctttaatagcctgtagtattgaattaaacaatttcttttcagcattatacatcattaat 35723440  T
Q  301 ttagtnnnnnnnncattgttgctcttgttacctcttcaactgtgctataattt 353  Q
    |||||        |||||||||||||| |||||||||||||||||||||||||    
T  35723439 ttagtaaaaaaaacattgttgctcttggtacctcttcaactgtgctataattt 35723387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 35726887 - 35727137
Alignment:
Q  3 gcaagcctccaaagccaaagattggaggaatgatcagaactaggtgtgaaaacttgcttccattgtgcctttccatcaataggtggtctagtgagctcaa 102  Q
    |||||||||||||||||||||||||  ||||   |||||  ||| ||||| | ||| ||||||||||  ||  || |||||  |||||||||||||||||    
T  35726887 gcaagcctccaaagccaaagattggtagaat---cagaagcaggagtgaagatttgtttccattgtggtttgtcaccaataattggtctagtgagctcaa 35726983  T
Q  103 tagctagtggcttcaatattccttcactagtaaggaagaatagtgttcttgatccatatagtgttgttccctcaatctctctcactttgcttacatatgg 202  Q
    |  |||| ||||||||| | ||||   | || |||||||| | ||||||||||||||| ||||| ||   ||  || || ||||||||||||||||||||    
T  35726984 tgactagcggcttcaatgtgccttgtttggtgaggaagaacaatgttcttgatccatacagtgtagtattcttcatttccctcactttgcttacatatgg 35727083  T
Q  203 tatgtagaaatcatgatagtctagcatgaacaacttcttctcttcaatagcctg 256  Q
    ||  || | |||||| |||||||| |  ||||| |||||||||| ||| |||||    
T  35727084 taaatatagatcatggtagtctagtacaaacaatttcttctcttgaatggcctg 35727137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 22512836 - 22513041
Alignment:
Q  35 atcagaactaggtgtgaaaacttgcttccattgtgcctttccatcaataggtggtctagtgagctcaatagctagtggcttcaatattccttcactagta 134  Q
    |||||||  ||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||| || |||||||||| || || ||||||||     
T  22512836 atcagaatcaggtgtgaagacttgcttccattgtgccttgctattaataggtggtctagtgagctcaatatctggtggcttcaaaatgccgtcactagtg 22512935  T
Q  135 aggaagaatagtgttcttgatccatatagtgttgttccctcaatctctctcactttgcttacatatggtatgtagaaatcatgatagtctagcatgaaca 234  Q
    |||||| ||||||  |||||||||||||||||||  |||||| ||| ||||||||||||||||||||| | | | | |||||||||||||||||||||||    
T  22512936 aggaaggatagtgaccttgatccatatagtgttgcaccctcactctttctcactttgcttacatatggcaagcatagatcatgatagtctagcatgaaca 22513035  T
Q  235 acttct 240  Q
    ||||||    
T  22513036 acttct 22513041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University