View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_low_10 (Length: 401)
Name: NF9918_low_10
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_10 |
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| [»] scaffold0166 (3 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 34018 - 34320
Alignment:
| Q |
16 |
actgtaaattgtactgtttctgtgaaatctacgagttgtgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34018 |
actgtaaattgtactgtttctgtgaaatctacgagttgtgtttgttaatagtactgttaagatttgcgtgttttcgtgttaatattcagttttgctttga |
34117 |
T |
|
| Q |
116 |
cttatgaataaggtgataatacagaatattttcttttgtactaactattggtagtttgtagcacagcacaacttcacaatttcttttgtcctaaatcaaa |
215 |
Q |
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||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34118 |
cttgtgaataaggtgatgatacagaatattttcttttgtagtaactattggtagtttgtagcacagcacaacttcacactttcttttgtcctaaatcaaa |
34217 |
T |
|
| Q |
216 |
atgtgattcttctgattgtactaaatcaatagaatcgttttggtatatgcttatttccatggaaaaggggactatgttgtgtcttctttttgtctattta |
315 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34218 |
atgtgattcttctgattatattaaatcaatagaatcgttttggtatatgcttatttccatggaaaaggggagtatgttgtgtcttctttttgtctattta |
34317 |
T |
|
| Q |
316 |
ttc |
318 |
Q |
| |
|
||| |
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|
| T |
34318 |
ttc |
34320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 20340 - 20266
Alignment:
| Q |
54 |
tgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttgacttatgaataaggt |
129 |
Q |
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|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
20340 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgac-tatgaataaggt |
20266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 34316 - 34354
Alignment:
| Q |
346 |
tattcatctagttcatcaatctataatgaaacctatttt |
384 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
34316 |
tattcatccagttcatcaatctataatgaaacctatttt |
34354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 24791635 - 24791937
Alignment:
| Q |
16 |
actgtaaattgtactgtttctgtgaaatctacgagttgtgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24791635 |
actgtaaattgtactgtttctgtgaaatctacgagttgtgtttgttaatagtactgttaagatttgcgtgttttcgtgttaatattcagttttgctttga |
24791734 |
T |
|
| Q |
116 |
cttatgaataaggtgataatacagaatattttcttttgtactaactattggtagtttgtagcacagcacaacttcacaatttcttttgtcctaaatcaaa |
215 |
Q |
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||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24791735 |
cttgtgaataaggtgatgatacagaatattttcttttgtagtaactattggtagtttgtagcacagcacaacttcacactttcttttgtcctaaatcaaa |
24791834 |
T |
|
| Q |
216 |
atgtgattcttctgattgtactaaatcaatagaatcgttttggtatatgcttatttccatggaaaaggggactatgttgtgtcttctttttgtctattta |
315 |
Q |
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|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24791835 |
atgtgattcttctgattatattaaatcaatagaatcgttttggtatatgcttatttccatggaaaaggggagtatgttgtgtcttctttttgtctattta |
24791934 |
T |
|
| Q |
316 |
ttc |
318 |
Q |
| |
|
||| |
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|
| T |
24791935 |
ttc |
24791937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 24650563 - 24650697
Alignment:
| Q |
16 |
actgtaaattgtactgtttctgtgaaatctacgagttgtgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttga |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24650563 |
actgtaaattgtactgtttctgtgaaatctacgagttgtgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttga |
24650662 |
T |
|
| Q |
116 |
cttatgaataaggtgataatacagaatattttctt |
150 |
Q |
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||| ||||||||||||| ||||||||||||||||| |
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| T |
24650663 |
cttgtgaataaggtgatgatacagaatattttctt |
24650697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 24651078 - 24651168
Alignment:
| Q |
142 |
tattttcttttgtactaactattggtagtttgtagcacagcacaacttcacaatttcttttgtcctaaatcaaaatgtgattcttctgatt |
232 |
Q |
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|
|||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24651078 |
tattttcttttgtactaactattgatagtttggagcccagcacagcttcacaatttcttttatcctaaatcaaaatgtgattcttctgatt |
24651168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 24777957 - 24777883
Alignment:
| Q |
54 |
tgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttgacttatgaataaggt |
129 |
Q |
| |
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|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
24777957 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgac-tatgaataaggt |
24777883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 24791933 - 24791971
Alignment:
| Q |
346 |
tattcatctagttcatcaatctataatgaaacctatttt |
384 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
24791933 |
tattcatccagttcatcaatctataatgaaacctatttt |
24791971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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