View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9918_low_11 (Length: 378)
Name: NF9918_low_11
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_11 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 32659613 - 32659252
Alignment:
| Q |
1 |
tgatcatgacaatgacaaggctaaacaaaaatctttgnnnnnnnnnnnnnnnncggcttacctaaaggagaattgtagtagaggcactgtgaggcctgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
32659613 |
tgatcatgacaatgacaaggctaaacaaaaatctttgttttttcaacttttttcggcttacctaaaggagaattgtagtagaggcaatgtgaggccagtg |
32659514 |
T |
|
| Q |
101 |
ccggtcatgctcggtgagggtcaattgcttgatttatatcaattgttcgcccttgtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32659513 |
ccggtcatgctcggtgagggtcaattgcttgatttatatcaattgtttgcccttgtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgt |
32659414 |
T |
|
| Q |
201 |
ggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcggtgaaattagtttttgacaaatatctgaatgatttcgaaggttggctcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32659413 |
ggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcagtgaaattagtttttgacaaatatctgaatgatttcgaaggttggctcag |
32659314 |
T |
|
| Q |
301 |
gaaatcttttgaagagaagagtttaaaaaatgggaatgatgggttgaactcattgccaatag |
362 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32659313 |
gaaatctttcgaagagaagagtttaaaaaatgggaatgatgggttgaactcattgccaatag |
32659252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 32584055 - 32583691
Alignment:
| Q |
1 |
tgatcatgacaatgacaaggctaaacaaaaatctttgnnnnnnnnnnnnnnnncggcttacctaaaggagaattgtagtagaggcactgtgaggcctgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32584055 |
tgatcatgacaatgacaaggctaaacaaaaatctttgttttttcaacttttttcggcttacctaaaggagaattgtagtagaggcactgtgaggcctgtg |
32583956 |
T |
|
| Q |
101 |
ccggtcatgctcggtgagggtcaattgcttgatttatatcaattgttcgcccttgtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32583955 |
ccagtcatgctcggtgagggtcaattgcttgatttatatcaattattcgcccttgtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgt |
32583856 |
T |
|
| Q |
201 |
ggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcggtgaaattagtttttgacaaatatctgaatgatttcgaaggttggctcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32583855 |
ggaattctgtgatagttgaactgggtttggaccttcgtgttctagcttcggtgaaattagtttttgacaaatatctgaatgatttcgaaggttggctcag |
32583756 |
T |
|
| Q |
301 |
gaaatcttttgaagagaagagtttaaaaaatgggaatgatggg---ttgaactcattgccaatag |
362 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32583755 |
gaaatctttcgaagagaagagtttaaaaaatgggaatgatgggtatttgaactcattgccaatag |
32583691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 32633896 - 32633532
Alignment:
| Q |
1 |
tgatcatgacaatgacaaggctaaacaaaaatctttgnnnnnnnnnnnnnnnncggcttacctaaaggagaattgtagtagaggcactgtgaggcctgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
32633896 |
tgatcatgacaatgacaaggctaaacaaaaatctttgttttgtcaatttttttcggcttacctaaaggagaattgtagtagaggcaatgtgaggcctgtg |
32633797 |
T |
|
| Q |
101 |
ccggtcatgctcggtgagggtcaattgcttgatttatatcaattgttcgcccttgtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
32633796 |
ccggtgatgctcggtgagggtcaattgcttgatttatatcaattgttctcccttgtgaaggaaaaaggtgggtatgatgcggtatcaagaaaagggttgt |
32633697 |
T |
|
| Q |
201 |
ggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcggtgaaattagtttttgacaaatatctgaatgatttcgaaggttggctcag |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32633696 |
ggaagtctgtgatagttgaactgggtttggaccttcgtgttctaccttcggtgaaattattttttgacaaatatctgaatgatttcgaaggttggctcag |
32633597 |
T |
|
| Q |
301 |
gaaatcttttgaagagaagagtttaaaaaatgggaatgatggg---ttgaactcattgccaatag |
362 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32633596 |
gaaatctctcgaagagaatagtttaaaaaatgggaatgatgggtatttgaactcattgccaatag |
32633532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 155 - 362
Target Start/End: Complemental strand, 32601571 - 32601361
Alignment:
| Q |
155 |
gtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcggtga |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32601571 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtgttctagcttcggtga |
32601472 |
T |
|
| Q |
255 |
aattagtttttgacaaatatctgaatgatttcgaaggttggctcaggaaatcttttgaagagaagagtttaaaaaatgggaatgatggg---ttgaactc |
351 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
32601471 |
aattaggttttgacaaatatctaaatgatttcgaaggttggctcaggaaatcttacgaagagaagagttcaaaaaatgggaatgatgggtatttgaactc |
32601372 |
T |
|
| Q |
352 |
attgccaatag |
362 |
Q |
| |
|
||||||||||| |
|
|
| T |
32601371 |
attgccaatag |
32601361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 150 - 338
Target Start/End: Original strand, 30252354 - 30252542
Alignment:
| Q |
150 |
cccttgtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtattctagcttc |
249 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||||||||||| | || | ||||| |
|
|
| T |
30252354 |
cccttgtgaaggaaaaaggagggtatgcggcagtatcgagaaaagggttgtgggactctgtgatagttgatctgggtttggaccttaatgttttggcttc |
30252453 |
T |
|
| Q |
250 |
ggtgaaattagtttttgacaaatatctgaatgatttcgaaggttggctcaggaaatcttttgaagagaagagtttaaaaaatgggaatg |
338 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||| ||| ||||| |||||||| |||||| |||||| |
|
|
| T |
30252454 |
agtgaaattagtttatgaaaaatatctgagtgatttcgaaggttggctcagcaaaacttccgaagaaaagagtttcaaaaattggaatg |
30252542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 32601696 - 32601578
Alignment:
| Q |
1 |
tgatcatgacaatgacaaggctaaacaaaaatctttgnnnnnnnnnnnnnnnncggcttacctaaaggagaattgtagtagaggcactgtgaggcctgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
32601696 |
tgatcatgacaatgacaaggctaaacaaaaatctttgttttgtcaactttttttggtttacctaaaggagaattgtagtagaggcaatgcgaggcctgtg |
32601597 |
T |
|
| Q |
101 |
ccggtcatgctcggtgagg |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32601596 |
ccggtcatgctcggtgagg |
32601578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 58 - 344
Target Start/End: Complemental strand, 41149917 - 41149631
Alignment:
| Q |
58 |
ttacctaaaggagaattgtagtagaggcactgtgaggcctgtgccggtcatgctcggtgagggtcaattgcttgatttatatcaattgttcgcccttgtg |
157 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41149917 |
ttacctaaaggagaattgtagtaagggcaatgtgaggcctgtgccagtgatgcttggtgatggtcaattgcttgatttatatcaattattctcccttgtg |
41149818 |
T |
|
| Q |
158 |
aaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcggtgaaat |
257 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
41149817 |
aaggaaaaaggtgggtatgatgcgatatcgagaaaagggttgtgggattccgtgatagatgaactgggtttggaccttcgtattttggcttcggtgaaat |
41149718 |
T |
|
| Q |
258 |
tagtttttgacaaatatctgaatgatttcgaaggttggctcaggaaatcttttgaagagaagagtttaaaaaatgggaatgatgggt |
344 |
Q |
| |
|
|||| | ||| |||||||||| |||||||||||||||||| || ||| |||||||||||||||||| ||| |||||| | |||||| |
|
|
| T |
41149717 |
tagtatatgaaaaatatctgagtgatttcgaaggttggcttagaaaaacttttgaagagaagagttgcaaagatgggagtcatgggt |
41149631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 58 - 344
Target Start/End: Complemental strand, 41176368 - 41176082
Alignment:
| Q |
58 |
ttacctaaaggagaattgtagtagaggcactgtgaggcctgtgccggtcatgctcggtgagggtcaattgcttgatttatatcaattgttcgcccttgtg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
41176368 |
ttacctaaaggagaattgtagtagaggcattgtgaggccaatgccggtgatgctcggtgatggtccgttgcttgatttatatcaactgttcttccttgtg |
41176269 |
T |
|
| Q |
158 |
aaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcggtgaaat |
257 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||| | || | || || ||||||| |
|
|
| T |
41176268 |
aaggaaaaaggtgggtatgatgcggtatcgagaaaagggctgtgggattctgtgataattgaaatgggttttaaccttcatgttttggcatccgtgaaat |
41176169 |
T |
|
| Q |
258 |
tagtttttgacaaatatctgaatgatttcgaaggttggctcaggaaatcttttgaagagaagagtttaaaaaatgggaatgatgggt |
344 |
Q |
| |
|
|||||| ||| |||||||||| |||||| |||||||||||||| ||| | |||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
41176168 |
tagtttatgaaaaatatctgagtgattttgaaggttggctcagcaaaacatttgaagagaggagtttaaaaaatgggaatcatgggt |
41176082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 273
Target Start/End: Original strand, 3733787 - 3734002
Alignment:
| Q |
58 |
ttacctaaaggagaattgtagtagaggcactgtgaggcctgtgccggtcatgctcggtgagggtcaattgcttgatttatatcaattgttcgcccttgtg |
157 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||| |||||| | || || ||||| ||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
3733787 |
ttacctaaaggaaaattgtagtaagggcaatgtgaggcttgtgccaatgatactaggtgatggtaaattgcttgatttatatcaattattctcccttgtg |
3733886 |
T |
|
| Q |
158 |
aaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcggtgaaat |
257 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||| |||||||||| ||| ||||||| |||||||||||||||| |||||||| | |||| |||||||| |
|
|
| T |
3733887 |
aaggaaaaaggttggtatgatgcgatatctagaatagggttgtgggatttcgtgatagatgaactgggtttggacattcgtattttggctttggtgaaat |
3733986 |
T |
|
| Q |
258 |
tagtttttgacaaata |
273 |
Q |
| |
|
|||||| ||| ||||| |
|
|
| T |
3733987 |
tagtttatgaaaaata |
3734002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 3734116 - 3734012
Alignment:
| Q |
60 |
acctaaaggagaattgtagtagaggcactgtgaggcctgtgccggtcatgctcggtgagggtcaattgcttgatttatatcaattgttcgcccttgtgaa |
159 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||| ||||| ||| || || |||| |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3734116 |
acctaaaggagaattgaagtaacggcaatgtgaggcatgtgctggtgatacttagtgatggtcaattgcttgatttatatcaattattctcccttgtgaa |
3734017 |
T |
|
| Q |
160 |
ggaaa |
164 |
Q |
| |
|
||||| |
|
|
| T |
3734016 |
ggaaa |
3734012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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