View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9918_low_14 (Length: 357)

Name: NF9918_low_14
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9918_low_14
NF9918_low_14
[»] chr2 (3 HSPs)
chr2 (6-200)||(32512688-32512883)
chr2 (247-344)||(32513040-32513137)
chr2 (196-246)||(32512906-32512956)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 32512688 - 32512883
Alignment:
Q  6 aggagcagagaaattctctccaaactctcatcatgtttgcaaatttta---aagttgaaggactgaaannnnnnnnnnnnnngtaaaaaccttttcttgg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||              ||||||||||||||||||    
T  32512688 aggagcagagaaattctctccaaactctcatcatgtttgcaaattttattaaagttgaaggactgaaaagagagagaaag--gtaaaaaccttttcttgg 32512785  T
Q  103 ttagatttatcttctttccttttcttccttctgattattattttaaaccatttctttggacccattctaaaacaagcctgcatatcaatattcaaaca 200  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32512786 ttggatttatcttctttccgtttcttccttctgattattattttaaaccatttctttggacccattctaaaacaagcctgcatatcaatattcaaaca 32512883  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 32513040 - 32513137
Alignment:
Q  247 gttagtttcataaaattttaaaagttaaaatatgaaagtatatcataccatcgtttagaccttctaatagcaagaacatcaaacagctaccttatttc 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32513040 gttagtttcataaaattttaaaagttaaaatatgaaagtatatcataccatcgtgtagaccttctaatagcaagaacatcaaacagctaccttatttc 32513137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 32512906 - 32512956
Alignment:
Q  196 aaacagctataatacttgaagaaatgtgtctagaaaatcataaactccatt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32512906 aaacagctataatacttgaagaaatgtgtctagaaaatcataaactccatt 32512956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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