View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9918_low_15 (Length: 349)
Name: NF9918_low_15
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 147 - 339
Target Start/End: Original strand, 3790631 - 3790823
Alignment:
| Q |
147 |
gataacaacaaaagcaatgaataataaactagctttatggaattttattacaaaaattctaattgtgaaatctataccaaaacagtaaaaagtattacct |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3790631 |
gataacaacaaaagcaatgaatagtaaactagatttatggaattttattataaaaattctaattgtgaaatctataccaaaacaataaaaagtattacct |
3790730 |
T |
|
| Q |
247 |
tcagaatcaataataccatcttcaataagtttaggtatacagacggcacatgccaaagtagtggaagaagctggacaaagtagagaccctttg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3790731 |
tcagaatcaataataccatcttcaataagtttaggtatgcagacagcacatgctaaagtagtggaagaagctggacaaagtagagcccctttg |
3790823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 331
Target Start/End: Complemental strand, 3798722 - 3798542
Alignment:
| Q |
148 |
ataacaacaaaagcaatgaataataaactagctttatggaattttattacaaaaattctaattgtgaaatctataccaaaacagtaaaaagtattacctt |
247 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| || |||||| |||| |||| ||| | | ||| ||||||||| |
|
|
| T |
3798722 |
ataacaacaaaaggaatgaataataaactagctttatgtaattatattccaaaattttaaattgtaaaatttata---aaataaaataaattattacctt |
3798626 |
T |
|
| Q |
248 |
cagaatcaataataccatcttcaataagtttaggtatacagacggcacatgccaaagtagtggaagaagctggacaaagtagag |
331 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| || || |||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3798625 |
gagaatcaataatcccatcttcaataagtttatgtacgcaaacaccacaagccaaagtagtggcagaagctggaaaaagtagag |
3798542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 3790503 - 3790533
Alignment:
| Q |
19 |
actatctgggctttggtgctctctttctacc |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3790503 |
actatctgggctttggtgctctctttctacc |
3790533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University