View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9918_low_17 (Length: 339)
Name: NF9918_low_17
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_17 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 4575643 - 4575970
Alignment:
| Q |
18 |
ttaagaggattttacatgcccattgatttggtttatatatagccgaccttttctcaatgcatgtacatagagaaccccacaaattctcaaattaaaatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4575643 |
ttaagaggattttacatgcccattgatttggtttatatatagccgaccttttctcaatgcatgtacatagagaaccccacaaattctcaaattaaaatat |
4575742 |
T |
|
| Q |
118 |
ttagaaaatcattgatacgattttacatatatatgcattttgttatggcctatataaatcatacaatttttgacttcaaatctatgcttgtagcacattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4575743 |
ttagaaaatcattgatacgattttacatatatatgcattttgttatggcctatataaatcatacaatttttgacttcaaatctatgcttgcagcacattt |
4575842 |
T |
|
| Q |
218 |
ggtatatctaccttaaatcattgttgctaaagaaatggcaaaattggggttctatgtgatccttac------gttggtgttggtgtcattttcatgctgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4575843 |
ggtatatctaccttaaatcattgttgctaaagaaatggcaaaattggggttctatgtgatccttacgttggtgttggtgttggtgtcattttcatgctgt |
4575942 |
T |
|
| Q |
312 |
gagtctcgtccacttggtactactcaat |
339 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4575943 |
gagtctcgtccacttggtactactcaat |
4575970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University