View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_low_18 (Length: 321)
Name: NF9918_low_18
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 138 - 316
Target Start/End: Original strand, 46892850 - 46893027
Alignment:
| Q |
138 |
ttgttttttacaacttagttgttcaacaattatgcaatgctcaaccaatactttatttga---ttgttttttacttatgttttcatcatttt-aatttgg |
233 |
Q |
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| T |
46892850 |
ttgttttttacaacttagttgttcaacaattatacaatgctcaaccaatactttatttgattgttgttttttacttatgttttcatcattttcattttgg |
46892949 |
T |
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| Q |
234 |
tctttgtatcgacaatagtttctgagtgttagttagatatatgaaattactagnnnnnnntatccatgaaagatgttgtagtt |
316 |
Q |
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| T |
46892950 |
tctttgtatcgacaatagtttctgagt----gttagatatatgaaattactag-aaaaaatatccatgaaagatgttgtagtt |
46893027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 46892721 - 46892833
Alignment:
| Q |
1 |
tctaagaacaagaaacgtactacggataaagactcgtgacgttcatgtcattatcatcgtcactctttgttggctgttgttgttctttaataacatgtaa |
100 |
Q |
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| T |
46892721 |
tctaagaacaagaaacgtactacggataaagactcgtgacgttcatgtcattatcatcgtcactctttgttggctgttgttggtctttaataacatgtaa |
46892820 |
T |
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| Q |
101 |
ggaattcacattg |
113 |
Q |
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| T |
46892821 |
gaaattcacattg |
46892833 |
T |
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