View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9918_low_23 (Length: 297)

Name: NF9918_low_23
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9918_low_23
NF9918_low_23
[»] chr2 (3 HSPs)
chr2 (1-211)||(30860128-30860337)
chr2 (37-142)||(25951016-25951123)
chr2 (53-85)||(5320215-5320247)
[»] chr1 (4 HSPs)
chr1 (3-137)||(13342720-13342856)
chr1 (37-142)||(17177198-17177305)
chr1 (63-142)||(43861647-43861727)
chr1 (25-142)||(42541360-42541479)
[»] chr6 (5 HSPs)
chr6 (37-142)||(7704186-7704293)
chr6 (37-142)||(6046572-6046679)
chr6 (37-142)||(12113328-12113435)
chr6 (3-49)||(35081572-35081618)
chr6 (51-87)||(8542063-8542099)
[»] chr4 (6 HSPs)
chr4 (37-142)||(3887762-3887869)
chr4 (42-142)||(32414660-32414762)
chr4 (3-85)||(5577192-5577275)
chr4 (63-142)||(12582756-12582836)
chr4 (63-121)||(47981749-47981808)
chr4 (37-90)||(32416589-32416643)
[»] chr8 (5 HSPs)
chr8 (3-87)||(3793920-3794005)
chr8 (75-140)||(5016856-5016922)
chr8 (37-121)||(38966046-38966132)
chr8 (37-106)||(15556954-15557025)
chr8 (63-127)||(21662276-21662341)
[»] chr3 (9 HSPs)
chr3 (3-85)||(50430089-50430172)
chr3 (49-142)||(31237742-31237836)
chr3 (37-126)||(37236184-37236275)
chr3 (37-176)||(1850895-1851035)
chr3 (1-90)||(49308933-49309023)
chr3 (3-85)||(12870754-12870835)
chr3 (51-90)||(52739942-52739981)
chr3 (16-85)||(6232631-6232701)
chr3 (37-85)||(19747400-19747449)
[»] chr7 (7 HSPs)
chr7 (37-140)||(21979892-21979997)
chr7 (37-121)||(13956475-13956561)
chr7 (37-106)||(36497876-36497947)
chr7 (3-85)||(37741436-37741519)
chr7 (3-85)||(35846429-35846512)
chr7 (53-98)||(33509948-33509994)
chr7 (3-49)||(41274547-41274593)
[»] chr5 (3 HSPs)
chr5 (3-98)||(7320625-7320722)
chr5 (37-121)||(24315807-24315893)
chr5 (37-121)||(24358140-24358226)
[»] scaffold0025 (1 HSPs)
scaffold0025 (3-85)||(47042-47125)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30860128 - 30860337
Alignment:
Q  1 agtcgagatcctgggcaagatcggggaggggtcactagattgtgaatc-ggggatcgtaacatggatcgtaagatcctatcaaatttaaaatttatatat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||| ||||||  |    
T  30860128 agtcgagatcctgggcaagatcggggaggggtcactagattgtgaatcaggggatcgtaacacggatcataagatcctaccaaatttaaactttata--t 30860225  T
Q  100 attgcatgtctattcatacatatgcatatgaatcaacataattgactagaacaataattccaaataacacttaaattacttaacaaaaactgaaatttgg 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  30860226 attgcatatctattcatacatatgcatatgaatcaacataattgactagaacaataattccaaataacacttaaattactaaacaaaaactgaaatttag 30860325  T
Q  200 gatcataatatt 211  Q
    ||||||||||||    
T  30860326 gatcataatatt 30860337  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 25951016 - 25951123
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattt-aaaatttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| ||||||||||| |||||||||| ||||||||||||||| ||||||| |||||| ||||||||| ||| |  ||||||||||||||||||||| ||    
T  25951016 agatcgtgaatcgggggatcgtaacatagatcgtaagatcctaccaaatttaaaaattcatatatattccatataaattcatacatatgcatatgaagca 25951115  T
Q  135 acataatt 142  Q
    ||| ||||    
T  25951116 acacaatt 25951123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 5320215 - 5320247
Alignment:
Q  53 atcgtaacatggatcgtaagatcctatcaaatt 85  Q
    ||||||||| |||||||||||||||||||||||    
T  5320215 atcgtaacacggatcgtaagatcctatcaaatt 5320247  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 13342856 - 13342720
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcggg-gatcgtaacatggatcgtaagatcctatcaaattta-aaatttatatata 100  Q
    |||||||| | || |||||||||||||||||||||||| |||||| ||| ||| |||||| |||||||||||||||| |||||||| |||||  |||| |    
T  13342856 tcgagatcataggtaagatcggggaggggtcactagatcgtgaattgggagattgtaacacggatcgtaagatcctaccaaatttataaattcctataca 13342757  T
Q  101 ttgcatgtctattcatacatatgcatatgaatcaaca 137  Q
    |||||| || ||||||||||||||||||||| |||||    
T  13342756 ttgcatatcgattcatacatatgcatatgaagcaaca 13342720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 17177305 - 17177198
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattt-aaaatttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||| |||||||||  || |  ||||||||||||||||||||| ||    
T  17177305 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctatcaaatttaaaaattcatatatattcaatataaattcatacatatgcatatgaagca 17177206  T
Q  135 acataatt 142  Q
    ||| ||||    
T  17177205 acacaatt 17177198  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 43861727 - 43861647
Alignment:
Q  63 ggatcgtaagatcctatcaaatttaaaattt-atatatattgcatgtctattcatacatatgcatatgaatcaacataatt 142  Q
    |||||||||||||||| ||||||||||| || ||||||||| ||| |  ||||||||||||||||||||| ||||| ||||    
T  43861727 ggatcgtaagatcctaccaaatttaaaaattcatatatattccatataaattcatacatatgcatatgaagcaacacaatt 43861647  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 42541360 - 42541479
Alignment:
Q  25 ggaggggtcactagattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacatat 122  Q
    ||||||||||| ||||  |||||||||| |||| |||| || || |||||||||| |||||| | ||||| |||  |||||||| |  ||||||||||||    
T  42541360 ggaggggtcacaagatcatgaatcgggggatcgcaacacgggtcttaagatcctaccaaattcagaaattcatacgtattgcatatagattcatacatat 42541459  T
Q  123 gcatatgaatcaacataatt 142  Q
    |||||| || | ||||||||    
T  42541460 gcatataaaactacataatt 42541479  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 7704186 - 7704293
Alignment:
Q  37 agattgtgaatcgg-ggatcgtaacatggatcgtaagatcctatcaaatttaaaa-tttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||| |  ||||||| |||| |||||||| ||    
T  7704186 agatcgtgaatcggaggatcgtaacacggatcgtaagatcctaccaaatttaaaagttcatatatattgcatataaattcatagatattcatatgaagca 7704285  T
Q  135 acataatt 142  Q
    ||||||||    
T  7704286 acataatt 7704293  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 6046679 - 6046572
Alignment:
Q  37 agattgtgaatcgggga-tcgtaacatggatcgtaagatcctatcaaatttaaaa-tttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| |||||| ||||| |||||| | |||| ||||||||||| ||||||||||| |||||||||||||||| |  ||||||||||||||||||||| ||    
T  6046679 agatcgtgaattggggaatcgtaatacggattgtaagatcctaccaaatttaaaaatttatatatattgcatataaattcatacatatgcatatgaagca 6046580  T
Q  135 acataatt 142  Q
    ||| ||||    
T  6046579 acacaatt 6046572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 12113435 - 12113328
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||| |  |||||||||||  || ||||| ||    
T  12113435 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctaccaaatttagaaattcatatatattgcatataaattcatacatactcacatgaagca 12113336  T
Q  135 acataatt 142  Q
    ||||||||    
T  12113335 acataatt 12113328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 35081618 - 35081572
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcg 49  Q
    |||||||||| ||||||||||| |||||||||| |||| ||||||||    
T  35081618 tcgagatcctaggcaagatcggagaggggtcacaagatcgtgaatcg 35081572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 8542099 - 8542063
Alignment:
Q  51 ggatcgtaacatggatcgtaagatcctatcaaattta 87  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  8542099 ggatcgtaacatggatcggaagatcctaccaaattta 8542063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 3887762 - 3887869
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||| |  |||||||||||  |||||||| ||    
T  3887762 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctaccaaatttagaaattcatatatattgcatataaattcatacatactcatatgaagca 3887861  T
Q  135 acataatt 142  Q
    ||||||||    
T  3887862 acataatt 3887869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 32414660 - 32414762
Alignment:
Q  42 gtgaatcgg-ggatcgtaacatggatcgtaagatcctatcaaattt-aaaatttatatatattgcatgtctattcatacatatgcatatgaatcaacata 139  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||| |||||| ||||||||||||| |  ||||||| |||| |||||||| |||||||    
T  32414660 gtgaatcggaggatcgtaacacggatcgtaagatcctaccaaatttaaaaattcatatatattgcatataaattcatagatattcatatgaagcaacata 32414759  T
Q  140 att 142  Q
    |||    
T  32414760 att 32414762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 5577192 - 5577275
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcgg-ggatcgtaacatggatcgtaagatcctatcaaatt 85  Q
    |||||||||| ||||||||||| ||||| |||| |||| || |||||  ||||||||||| |||||||||||||||| ||||||    
T  5577192 tcgagatcctaggcaagatcggagagggatcacaagatcgtaaatcgatggatcgtaacacggatcgtaagatcctaccaaatt 5577275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 12582836 - 12582756
Alignment:
Q  63 ggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacatatgcatatgaatcaacataatt 142  Q
    |||||||||||||||| |||||||| |||||  |||| ||||||| |  |||||||||||| |||||||| ||||||||||    
T  12582836 ggatcgtaagatcctaccaaatttagaaattcgtataaattgcatataaattcatacatattcatatgaagcaacataatt 12582756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 47981808 - 47981749
Alignment:
Q  63 ggatcgtaagatcctatcaaattt-aaaatttatatatattgcatgtctattcatacata 121  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||| |  |||||||||||    
T  47981808 ggatcgtaagatcctaccaaatttaaaaattcatatatattgcatataaattcatacata 47981749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 32416643 - 32416589
Alignment:
Q  37 agattgtgaatcgg-ggatcgtaacatggatcgtaagatcctatcaaatttaaaa 90  Q
    |||| ||||||||| ||||||||||| || ||||||||||||| |||||||||||    
T  32416643 agatcgtgaatcggaggatcgtaacacggttcgtaagatcctaccaaatttaaaa 32416589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 3794005 - 3793920
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcggg-gatcgtaacatggatcgtaagatcctatcaaattta 87  Q
    |||||||||| || ||||||||||||| ||||| |||| |||||||||| |||||||||| |||||||||||||||| ||||||||    
T  3794005 tcgagatcctaggtaagatcggggaggagtcacaagatcgtgaatcgggagatcgtaacacggatcgtaagatcctaccaaattta 3793920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 5016922 - 5016856
Alignment:
Q  75 cctatcaaattta-aaatttatatatattgcatgtctattcatacatatgcatatgaatcaacataa 140  Q
    ||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||||    
T  5016922 cctatcaaatttagaaattcaaatatattgcatgtatattcatacatatgcatatgaagcaacataa 5016856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 38966132 - 38966046
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacata 121  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||| |  |||||||||||    
T  38966132 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctaccaaatttagaaattcatatatattgcatatgaattcatacata 38966046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 15557025 - 15556954
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcat 106  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||    
T  15557025 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctaccaaatttagaaattcatatatattgcat 15556954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 21662341 - 21662276
Alignment:
Q  63 ggatcgtaagatcctatcaaattt-aaaatttatatatattgcatgtctattcatacatatgcata 127  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||| |  |||||||||||| ||||    
T  21662341 ggatcgtaagatcctaccaaatttaaaaattcatatatattccatataaattcatacatattcata 21662276  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 50430089 - 50430172
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcg-gggatcgtaacatggatcgtaagatcctatcaaatt 85  Q
    |||||||| | ||||||||||| |||||||||| |||| |||||||| |||||||||||| |||||||||||||||| ||||||    
T  50430089 tcgagatcttaggcaagatcggagaggggtcacaagatcgtgaatcgagggatcgtaacacggatcgtaagatcctaccaaatt 50430172  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 31237836 - 31237742
Alignment:
Q  49 ggggatcgtaacatggatcgtaagatcctatcaaattt-aaaatttatatatattgcatgtctattcatacatatgcatatgaatcaacataatt 142  Q
    ||||||| ||||| |||||||||||||||| ||||||| |||||| ||||||||| ||| |  ||||||||||||||||||||| ||||| ||||    
T  31237836 ggggatcataacacggatcgtaagatcctaccaaatttaaaaattcatatatattccatataaattcatacatatgcatatgaagcaacacaatt 31237742  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 37236184 - 37236275
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattt-aaaatttatatatattgcatgtctattcatacatatgcat 126  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| ||||||| |||||| ||||||||| ||| |  ||||||||||||||||    
T  37236184 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctaccaaatttaaaaattcatatatattccatataaattcatacatatgcat 37236275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 1851035 - 1850895
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| ||||||||||| |||||| || |||| ||||||||||| |||||||| ||||| ||||||||| ||| |  |||||||||||| |||||||  ||    
T  1851035 agatcgtgaatcgggggatcgta-cacggattgtaagatcctaccaaatttagaaattcatatatattacatataaattcatacatattcatatgacgca 1850937  T
Q  135 acataattgactagaacaataattccaaataacacttaaatt 176  Q
    |||||||| | ||||| ||||| |  |||||||||| |||||    
T  1850936 acataatttaatagaaaaataactttaaataacactcaaatt 1850895  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 49309023 - 49308933
Alignment:
Q  1 agtcgagatcctgggcaagatcggggaggggtcactagattgtgaatc-ggggatcgtaacatggatcgtaagatcctatcaaatttaaaa 90  Q
    |||||||||| | ||||||||||| |||||||||| |||| ||||||| |||||| |||||| |||||| || |||||| |||||| ||||    
T  49309023 agtcgagatcgtaggcaagatcggagaggggtcacaagatcgtgaatcgggggattgtaacaaggatcggaatatcctaccaaattcaaaa 49308933  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 12870754 - 12870835
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaatt 85  Q
    |||||||| | ||||||||||| ||||  |||| |||| || |||||||| ||||||||| |||||||||||||||| ||||||    
T  12870754 tcgagatcttaggcaagatcggagagg--tcacaagatcgtaaatcgggggatcgtaacacggatcgtaagatcctaccaaatt 12870835  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 52739981 - 52739942
Alignment:
Q  51 ggatcgtaacatggatcgtaagatcctatcaaatttaaaa 90  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  52739981 ggatcgtaacatgaatcgtaagatcctaccaaatttaaaa 52739942  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 6232701 - 6232631
Alignment:
Q  16 caagatcggggaggggtcactagattgtgaatcggg-gatcgtaacatggatcgtaagatcctatcaaatt 85  Q
    ||||||||| ||||| |||| |||| ||||||| || |||||||||| |||||||||||| ||| ||||||    
T  6232701 caagatcggagagggttcacaagatcgtgaatcaggagatcgtaacacggatcgtaagattctaccaaatt 6232631  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 19747400 - 19747449
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaatt 85  Q
    |||| ||||||||||| ||| |||||||||||||||||||||| ||||||    
T  19747400 agatcgtgaatcgggggatcctaacatggatcgtaagatcctaccaaatt 19747449  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 21979997 - 21979892
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacatatgcatatgaatca 134  Q
    |||| ||||||||||| ||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||| |  |||||||||||  |||||||| ||    
T  21979997 agatcgtgaatcgggggatcgtaatacggatcgtaagatcctaccaaatttagaaattcatatatattgcatataaattcatacatactcatatgaagca 21979898  T
Q  135 acataa 140  Q
    ||||||    
T  21979897 acataa 21979892  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 13956475 - 13956561
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacata 121  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||| |  |||||||||||    
T  13956475 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctaccaaatttagaaattcatatatattgcatatgaattcatacata 13956561  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 36497947 - 36497876
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcat 106  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||    
T  36497947 agatcgtgaatcgggggatcgtaacacggatcgtaagatcctaccaaatttagaaattcatatatattgcat 36497876  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 37741436 - 37741519
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcggg-gatcgtaacatggatcgtaagatcctatcaaatt 85  Q
    |||||||||| ||||||||||| ||| |||||| |||| || ||||||| |||||||||| |||||| ||||||||| ||||||    
T  37741436 tcgagatcctaggcaagatcggagagaggtcacaagatcgtaaatcgggagatcgtaacacggatcgcaagatcctaccaaatt 37741519  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 35846429 - 35846512
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatc-ggggatcgtaacatggatcgtaagatcctatcaaatt 85  Q
    |||||||| | ||||||||||| ||||| |||| |||| ||||||| |||||||||||||  |||||||||||| || ||||||    
T  35846429 tcgagatcttaggcaagatcggagagggttcacaagatcgtgaatcgggggatcgtaacacagatcgtaagatcttaccaaatt 35846512  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 33509994 - 33509948
Alignment:
Q  53 atcgtaacatggatcgtaagatcctatcaaattta-aaatttatata 98  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  33509994 atcgtaacatggatcgtaagaacctaccaaatttagaaatttatata 33509948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 41274547 - 41274593
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcg 49  Q
    |||||||||| ||||||||||| |||||||||| |||| ||||||||    
T  41274547 tcgagatcctaggcaagatcggagaggggtcacaagatcgtgaatcg 41274593  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 7320722 - 7320625
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcgg-ggatcgtaacatggatcgtaagatcctatcaaattta-aaatttatata 98  Q
    |||||||||| || ||||||||||| ||||| | ||||||| ||||   ||||||||||| |||||||||||||||| |||||||| |||||||||||    
T  7320722 tcgagatcctaggtaagatcggggaagggtcgcaagattgtaaatcataggatcgtaacacggatcgtaagatcctaccaaatttagaaatttatata 7320625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 24315807 - 24315893
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacata 121  Q
    |||| ||||||||||| |||||||||  ||||||||||||||| |||||||| ||||| ||||||||||||| |  |||||||||||    
T  24315807 agatcgtgaatcgggggatcgtaacacagatcgtaagatcctaccaaatttagaaattcatatatattgcatatgaattcatacata 24315893  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 24358140 - 24358226
Alignment:
Q  37 agattgtgaatcgggg-atcgtaacatggatcgtaagatcctatcaaattta-aaatttatatatattgcatgtctattcatacata 121  Q
    |||| ||||||||||| |||||||||  ||||||||||||||| |||||||| ||||| ||||||||||||| |  |||||||||||    
T  24358140 agatcgtgaatcgggggatcgtaacacagatcgtaagatcctaccaaatttagaaattcatatatattgcatatgaattcatacata 24358226  T

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Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 47125 - 47042
Alignment:
Q  3 tcgagatcctgggcaagatcggggaggggtcactagattgtgaatcgg-ggatcgtaacatggatcgtaagatcctatcaaatt 85  Q
    |||||||||| ||||||||||| ||| ||| || |||| || |||||| ||||||||||| |||||||||||||||| ||||||    
T  47125 tcgagatcctaggcaagatcggagagaggttacaagatcgtaaatcggaggatcgtaacacggatcgtaagatcctaccaaatt 47042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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