View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_low_27 (Length: 269)
Name: NF9918_low_27
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_27 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 3791060 - 3790804
Alignment:
| Q |
13 |
aacctgtgtttccgagcaagacaagatacaagtggtgacactcccagatggtttggaacctgaagatgatagaagtgatataaagaaagttcttttatca |
112 |
Q |
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| T |
3791060 |
aaccggtgtttccgagcaagacaagatacaagtggtgacacttccagatggtttggaacctgaagatgatagaagtgatataaagaaagttcttttatca |
3790961 |
T |
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| Q |
113 |
attaaaagcaccatgcctcctagacttccaaaacttatagaagaagttaatgctttgaatgttgacaacaagatcaattgtattattgttacatttagta |
212 |
Q |
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| T |
3790960 |
attaaaagcaccatgcctcctagacttccaaaacttatagaagaagttaatgctttgaatgttgacaacaagatcaattgtattattgttacatttagta |
3790861 |
T |
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| Q |
213 |
tgggttgggccttggaagtgggccacaatttgggaatcaaagggtctctactttgtc |
269 |
Q |
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| T |
3790860 |
tgggttgggccttggaagtgggccacaatttgggaatcaaaggggctctactttgtc |
3790804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 3798297 - 3798550
Alignment:
| Q |
13 |
aacctgtgtttccgagcaagacaagatacaagtggtgacactcccagatggtttggaacctgaagatgatagaagtgatataaagaaagttcttttatca |
112 |
Q |
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| T |
3798297 |
aaccggtgttttcgagcaagacaagatacaagtgatgacactcccagatggtttggaatctgaagatgatagaagtgatataaagaaagttattttatct |
3798396 |
T |
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| Q |
113 |
attaaaagcaccatgcctcctagacttccaaaacttatagaagaagttaatgctttgaatgttgacaacaagatcaattgtattattgttacatttagta |
212 |
Q |
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| T |
3798397 |
attaaaagcaccatgccttctaaacttccaaagcttatagaagaagttaatgctttgaatgttgagagcaagatcaattgtattgttgttacatttaata |
3798496 |
T |
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| Q |
213 |
tgggttgggccttggaagtgggccacaatttgggaatcaaagggtctctacttt |
266 |
Q |
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| T |
3798497 |
tgggttgggctttggaagtgggacacaatttggggatcaaaggagctctacttt |
3798550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 3770913 - 3770707
Alignment:
| Q |
50 |
acactcccagatggtttggaacctgaagatgatagaagtgatataaagaaagttcttttatcaattaaaagcaccatgcctcctagacttccaaaactta |
149 |
Q |
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| T |
3770913 |
acactcccagatggtttggaacctgaagatgatagaagtgatcaaaagaaagttctcttctcaatcaaaagaaacatgcctcctttgcttcctaagctta |
3770814 |
T |
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| Q |
150 |
tagaagaagttaatgctttgaatgttgacaacaagatcaattgtattattgttacatttagtatgggttgggccttggaagtgggccacaatttgggaat |
249 |
Q |
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| T |
3770813 |
tagaagaagttaatgctttggatgatgaaaataagatttgttgtattattgttaccttcaatatgggatgggctttggaagttggacacaacttaggaat |
3770714 |
T |
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| Q |
250 |
caaaggg |
256 |
Q |
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|||||| |
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| T |
3770713 |
taaaggg |
3770707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 3783307 - 3783126
Alignment:
| Q |
50 |
acactcccagatggtttggaacctgaagatgatagaagtgatataaagaaagttcttttatcaattaaaagcaccatgcctcctagacttccaaaactta |
149 |
Q |
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| T |
3783307 |
acactcccagatggtttggaagatgaagacaacagaagtgaccaaaggaaagttattttctcaattagaagaaacatgcctcctttgctccctaatctca |
3783208 |
T |
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| Q |
150 |
tagaagaagttaatgctttgaatgttgacaacaagatcaattgtattattgttacatttagtatgggttgggccttggaagt |
231 |
Q |
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| T |
3783207 |
tagaagatgttaatgctatggatgctgagaataagatttcttgtattattgttactttcaatatgggatgggctttggaagt |
3783126 |
T |
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