View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_low_29 (Length: 260)
Name: NF9918_low_29
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 38312321 - 38312097
Alignment:
| Q |
14 |
ttggtgttgacgaggctgatgttgtggccacaatggaagctaaagcagccacagtaatggtagtgtgctgctgagcattatgtattttgctttcctcttt |
113 |
Q |
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| T |
38312321 |
ttggtgttgacgaggctgctgttgtggccacaatggaagctaaagcagccacagtaatagtagtgtgctgctgagcattatgtattttgctttcctcttt |
38312222 |
T |
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| Q |
114 |
ctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaatt |
213 |
Q |
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| T |
38312221 |
ctttcaaccatcttcttacagttttaggtcctgaacaagttgtgctgctgccaacagcagcagttgctcttccaccattagataatgggtgaatggaatt |
38312122 |
T |
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| Q |
214 |
gttttctcaagaaatatatagtgtg |
238 |
Q |
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| T |
38312121 |
gttttctcaagaaatatatagtgtg |
38312097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 38268420 - 38268316
Alignment:
| Q |
113 |
tctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaat |
212 |
Q |
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| T |
38268420 |
tctttcaaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaacaccggcacttgctcttccaccattgaataatgggtgaatggaat |
38268321 |
T |
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| Q |
213 |
tgttt |
217 |
Q |
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||||| |
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| T |
38268320 |
tgttt |
38268316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 38268493 - 38268434
Alignment:
| Q |
57 |
agcagccacagtaatggtagtgtgctgctgagcattatgtattttgctttcctctttctt |
116 |
Q |
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| T |
38268493 |
agcagccacagtaatagtagcgtgcagctgagcattttgtgttctgctttcttctttctt |
38268434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 31707668 - 31707711
Alignment:
| Q |
109 |
tctttctttcaaccatcttcttacagttttaggtcctgaacaag |
152 |
Q |
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| T |
31707668 |
tctttctttcaaccatcttcctactgttttaggtcctgaacaag |
31707711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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