View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9918_low_30 (Length: 259)
Name: NF9918_low_30
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 39696856 - 39696679
Alignment:
| Q |
62 |
agtttggtaaacccaactatctctaaagatgcaatcctaataagaggacaattagaacaccaatccatagcatgaaatgaaagattatgatcatcttcag |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39696856 |
agtttggtaaacccaactatctctaaagatggaatcctaataagaggacaattagaacaccaatccatagcatgaaatgaaagattatgatcatcttcag |
39696757 |
T |
|
| Q |
162 |
atactagaccaaggccactttgaagatcataggctaaccataaattctgcaggataaagttcattcatgctcagcttg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39696756 |
atactagaccaaggccactttgaagatcataggctaaccataaattctgcaggataaagttcattcatgctcagcttg |
39696679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University