View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_low_31 (Length: 256)
Name: NF9918_low_31
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30860483 - 30860739
Alignment:
| Q |
1 |
acaaaacattaaaacttaattataattctctcaattcccaaacacttcatgttggagtaggtcataattactcaagggatcatca-ttcctccattttat |
99 |
Q |
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| T |
30860483 |
acaaaacattaaaacttaattataattctctcaattcccaaacacttcatgttggagtaggtcataattactcaggggatcatcatttcctccattttat |
30860582 |
T |
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| Q |
100 |
tatcttcttcatcttccaattcatctctg------------------cctccgtaatgttcatcttctcaattatgaacaagaatggcatcctcatcctc |
181 |
Q |
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| T |
30860583 |
tatcttcttcatcttccaattcatctctgcctacacattcatctctacctccgtaatgtttatcttctcaattatgaacaagaatggcatcctcatcctc |
30860682 |
T |
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| Q |
182 |
ctcaatttgatattgattaacttcagcaaagtcctcatccaaaatttcagtgccaat |
238 |
Q |
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| T |
30860683 |
ctcaatttgatattgattcacttcagcaaagtcctcgtccaaaatttcagtgccaat |
30860739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 30861695 - 30861599
Alignment:
| Q |
2 |
caaaacattaaaacttaattataattctctcaattcccaaacacttcatgttggagtaggtcataattactcaagggatcatca-ttcctccatttt |
97 |
Q |
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|||||||| | |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||| |||||||||||| |
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| T |
30861695 |
caaaacataataacttaatcataattctctcaattcccaaacaattcatgttggagaaggtcataatcacttaagggatcatcatttcctccatttt |
30861599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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