View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9918_low_32 (Length: 252)

Name: NF9918_low_32
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9918_low_32
NF9918_low_32
[»] chr2 (11 HSPs)
chr2 (171-248)||(4576274-4576351)
chr2 (13-90)||(4576432-4576509)
chr2 (167-204)||(38248412-38248449)
chr2 (167-200)||(8065272-8065305)
chr2 (167-200)||(16126555-16126588)
chr2 (167-200)||(24729573-24729606)
chr2 (167-200)||(27665040-27665073)
chr2 (167-200)||(29157825-29157858)
chr2 (167-200)||(43388477-43388510)
chr2 (167-199)||(6109538-6109570)
chr2 (168-200)||(12016816-12016848)
[»] chr8 (12 HSPs)
chr8 (167-208)||(3306043-3306084)
chr8 (168-203)||(31812263-31812298)
chr8 (167-200)||(10129252-10129285)
chr8 (167-200)||(14961659-14961692)
chr8 (167-204)||(15198892-15198929)
chr8 (167-200)||(26682217-26682250)
chr8 (167-200)||(27874677-27874710)
chr8 (167-200)||(28014854-28014887)
chr8 (167-199)||(1203750-1203782)
chr8 (168-200)||(7140455-7140487)
chr8 (167-199)||(18567413-18567445)
chr8 (167-207)||(38843853-38843893)
[»] chr7 (7 HSPs)
chr7 (167-207)||(7170151-7170191)
chr7 (167-200)||(9332110-9332143)
chr7 (167-200)||(19889489-19889522)
chr7 (167-200)||(32117963-32117996)
chr7 (167-200)||(46290159-46290192)
chr7 (167-199)||(4969922-4969954)
chr7 (168-200)||(12085927-12085959)
[»] scaffold0727 (1 HSPs)
scaffold0727 (167-206)||(5840-5879)
[»] chr4 (7 HSPs)
chr4 (167-206)||(23553719-23553758)
chr4 (167-200)||(18882263-18882296)
chr4 (167-200)||(23051378-23051411)
chr4 (167-200)||(54495633-54495666)
chr4 (167-199)||(20098619-20098651)
chr4 (167-199)||(27362540-27362572)
chr4 (168-200)||(44916639-44916671)
[»] scaffold0111 (1 HSPs)
scaffold0111 (167-200)||(37110-37143)
[»] chr6 (4 HSPs)
chr6 (167-204)||(14228118-14228155)
chr6 (167-200)||(17552583-17552616)
chr6 (167-199)||(28247139-28247171)
chr6 (167-199)||(28943766-28943798)
[»] chr5 (7 HSPs)
chr5 (167-200)||(3398369-3398402)
chr5 (167-200)||(4047561-4047594)
chr5 (167-200)||(30839930-30839963)
chr5 (167-200)||(36597728-36597761)
chr5 (167-199)||(6863705-6863737)
chr5 (167-199)||(8103577-8103609)
chr5 (167-199)||(11636880-11636912)
[»] chr3 (7 HSPs)
chr3 (167-200)||(2571417-2571450)
chr3 (167-200)||(10307915-10307948)
chr3 (167-200)||(11611125-11611158)
chr3 (167-200)||(23523095-23523128)
chr3 (167-200)||(38389596-38389629)
chr3 (167-200)||(50204552-50204585)
chr3 (167-199)||(51618196-51618228)
[»] chr1 (12 HSPs)
chr1 (167-200)||(4249355-4249388)
chr1 (167-200)||(4249679-4249712)
chr1 (167-200)||(4250003-4250036)
chr1 (167-200)||(23576410-23576443)
chr1 (167-200)||(30172028-30172061)
chr1 (167-200)||(30187569-30187602)
chr1 (167-200)||(35512874-35512907)
chr1 (167-200)||(39150323-39150356)
chr1 (167-199)||(6180335-6180367)
chr1 (168-200)||(17919603-17919635)
chr1 (167-199)||(25465307-25465339)
chr1 (167-199)||(39310783-39310815)
[»] scaffold0038 (1 HSPs)
scaffold0038 (167-199)||(47301-47333)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 4576351 - 4576274
Alignment:
Q  171 tgcgaatttgcacatgatagaaaaacccttcatataatttaaaaactagctattctttcgaataagcaaatcattttt 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4576351 tgcgaatttgcacatgatagaaaaacccttcatataatttaaaaactagctattgtttcgaataagcaaatcattttt 4576274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 4576509 - 4576432
Alignment:
Q  13 cataggtacgtggaatctaaccgaaatgtagaattggtggatggagtatccaccaaactatttcttgggaaacaacac 90  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4576509 cataggtatatggaatctaaccgaaatgtagaattggtggatggagtatccaccaaactatttcttgggaaacaacac 4576432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 38248449 - 38248412
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcata 204  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  38248449 catgtgcaaatttgcacatgatagaaaaacccttcata 38248412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 8065272 - 8065305
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  8065272 catgtgcaaatttgcacatgatagaaaaaccctt 8065305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 16126588 - 16126555
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  16126588 catgtgcaaatttgcacatgatagaaaaaccctt 16126555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 24729606 - 24729573
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  24729606 catgtgcaaatttgcacatgatagaaaaaccctt 24729573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 27665073 - 27665040
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  27665073 catgtgcaaatttgcacatgatagaaaaaccctt 27665040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 29157858 - 29157825
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  29157858 catgtgcaaatttgcacatgatagaaaaaccctt 29157825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 43388510 - 43388477
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  43388510 catgtgcaaatttgcacatgatagaaaaaccctt 43388477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 6109538 - 6109570
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  6109538 catgtgcaaatttgcacatgatagaaaaaccct 6109570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 12016816 - 12016848
Alignment:
Q  168 atgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||| ||||||||||||||||||||||||||    
T  12016816 atgtgcaaatttgcacatgatagaaaaaccctt 12016848  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 3306084 - 3306043
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcatataat 208  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  3306084 catgtgcaaatttgcacatgatagaaaaacccttcctataat 3306043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 31812263 - 31812298
Alignment:
Q  168 atgtgcgaatttgcacatgatagaaaaacccttcat 203  Q
    |||||| |||||||||||||||||||||||||||||    
T  31812263 atgtgcaaatttgcacatgatagaaaaacccttcat 31812298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 10129252 - 10129285
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  10129252 catgtgcaaatttgcacatgatagaaaaaccctt 10129285  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 14961692 - 14961659
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  14961692 catgtgcaaatttgcacatgatagaaaaaccctt 14961659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 15198929 - 15198892
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcata 204  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  15198929 catgtgcaaatttgcacatgatagaaaaacccatcata 15198892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 26682217 - 26682250
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  26682217 catgtgcaaatttgcacatgatagaaaaaccctt 26682250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 27874710 - 27874677
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  27874710 catgtgcaaatttgcacatgatagaaaaaccctt 27874677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 28014887 - 28014854
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  28014887 catgtgcaaatttgcacatgatagaaaaaccctt 28014854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 1203750 - 1203782
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  1203750 catgtgcaaatttgcacatgatagaaaaaccct 1203782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 7140487 - 7140455
Alignment:
Q  168 atgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||| ||||||||||||||||||||||||||    
T  7140487 atgtgcaaatttgcacatgatagaaaaaccctt 7140455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 18567445 - 18567413
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  18567445 catgtgcaaatttgcacatgatagaaaaaccct 18567413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 38843853 - 38843893
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcatataa 207  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  38843853 catgtgcaaatttacacatgatagaaaaacccttcttataa 38843893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 7170151 - 7170191
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcatataa 207  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  7170151 catgtgcaaatttgcacatgatagaaaaacccttcaaataa 7170191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 9332110 - 9332143
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  9332110 catgtgcaaatttgcacatgatagaaaaaccctt 9332143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 19889489 - 19889522
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  19889489 catgtgcaaatttgcacatgatagaaaaaccctt 19889522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 32117963 - 32117996
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  32117963 catgtgcaaatttgcacatgatagaaaaaccctt 32117996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 46290159 - 46290192
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  46290159 catgtgcaaatttgcacatgatagaaaaaccctt 46290192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 4969922 - 4969954
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  4969922 catgtgcaaatttgcacatgatagaaaaaccct 4969954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 12085959 - 12085927
Alignment:
Q  168 atgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||| ||||||||||||||||||||||||||    
T  12085959 atgtgcaaatttgcacatgatagaaaaaccctt 12085927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 5840 - 5879
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcatata 206  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  5840 catgtgcaaatttgcacatgatagaaaaatccttcatata 5879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 23553719 - 23553758
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcatata 206  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  23553719 catgtgcaaatttgcacatgatagaaaaatccttcatata 23553758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 18882296 - 18882263
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  18882296 catgtgcaaatttgcacatgatagaaaaaccctt 18882263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 23051411 - 23051378
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  23051411 catgtgcaaatttgcacatgatagaaaaaccctt 23051378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 54495666 - 54495633
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  54495666 catgtgcaaatttgcacatgatagaaaaaccctt 54495633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 20098619 - 20098651
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  20098619 catgtgcaaatttgcacatgatagaaaaaccct 20098651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 27362540 - 27362572
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  27362540 catgtgcaaatttgcacatgatagaaaaaccct 27362572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 44916671 - 44916639
Alignment:
Q  168 atgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||| ||||||||||||||||||||||||||    
T  44916671 atgtgcaaatttgcacatgatagaaaaaccctt 44916639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 37143 - 37110
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  37143 catgtgcaaatttgcacatgatagaaaaaccctt 37110  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 14228155 - 14228118
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaacccttcata 204  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  14228155 catgtgcaaatttgcacatgatagaaaaacccatcata 14228118  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 17552616 - 17552583
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  17552616 catgtgcaaatttgcacatgatagaaaaaccctt 17552583  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 28247171 - 28247139
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  28247171 catgtgcaaatttgcacatgatagaaaaaccct 28247139  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 28943798 - 28943766
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  28943798 catgtgcaaatttgcacatgatagaaaaaccct 28943766  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 3398369 - 3398402
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  3398369 catgtgcaaatttgcacatgatagaaaaaccctt 3398402  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 4047561 - 4047594
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  4047561 catgtgcaaatttgcacatgatagaaaaaccctt 4047594  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 30839930 - 30839963
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  30839930 catgtgcaaatttgcacatgatagaaaaaccctt 30839963  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 36597728 - 36597761
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  36597728 catgtgcaaatttgcacatgatagaaaaaccctt 36597761  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 6863705 - 6863737
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  6863705 catgtgcaaatttgcacatgatagaaaaaccct 6863737  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 8103609 - 8103577
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  8103609 catgtgcaaatttgcacatgatagaaaaaccct 8103577  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 11636880 - 11636912
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  11636880 catgtgcaaatttgcacatgatagaaaaaccct 11636912  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 2571417 - 2571450
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  2571417 catgtgcaaatttgcacatgatagaaaaaccctt 2571450  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 10307915 - 10307948
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  10307915 catgtgcaaatttgcacatgatagaaaaaccctt 10307948  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 11611125 - 11611158
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  11611125 catgtgcaaatttgcacatgatagaaaaaccctt 11611158  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 23523095 - 23523128
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  23523095 catgtgcaaatttgcacatgatagaaaaaccctt 23523128  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 38389596 - 38389629
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  38389596 catgtgcaaatttgcacatgatagaaaaaccctt 38389629  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 50204552 - 50204585
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  50204552 catgtgcaaatttgcacatgatagaaaaaccctt 50204585  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 51618196 - 51618228
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  51618196 catgtgcaaatttgcacatgatagaaaaaccct 51618228  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 4249355 - 4249388
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||||||||||||||||| |||||||||||||    
T  4249355 catgtgcgaatttgcacatgttagaaaaaccctt 4249388  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 4249679 - 4249712
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||||||||||||||||| |||||||||||||    
T  4249679 catgtgcgaatttgcacatgttagaaaaaccctt 4249712  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 4250003 - 4250036
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||||||||||||||||| |||||||||||||    
T  4250003 catgtgcgaatttgcacatgttagaaaaaccctt 4250036  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 23576443 - 23576410
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  23576443 catgtgcaaatttgcacatgatagaaaaaccctt 23576410  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 30172028 - 30172061
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  30172028 catgtgcaaatttgcacatgatagaaaaaccctt 30172061  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 30187569 - 30187602
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  30187569 catgtgcaaatttgcacatgatagaaaaaccctt 30187602  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 35512874 - 35512907
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  35512874 catgtgcaaatttgcacatgatagaaaaaccctt 35512907  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 39150356 - 39150323
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    ||||||| ||||||||||||||||||||||||||    
T  39150356 catgtgcaaatttgcacatgatagaaaaaccctt 39150323  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 6180335 - 6180367
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  6180335 catgtgcaaatttgcacatgatagaaaaaccct 6180367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 17919603 - 17919635
Alignment:
Q  168 atgtgcgaatttgcacatgatagaaaaaccctt 200  Q
    |||||| ||||||||||||||||||||||||||    
T  17919603 atgtgcaaatttgcacatgatagaaaaaccctt 17919635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 25465307 - 25465339
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  25465307 catgtgcaaatttgcacatgatagaaaaaccct 25465339  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 39310815 - 39310783
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  39310815 catgtgcaaatttgcacatgatagaaaaaccct 39310783  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 47333 - 47301
Alignment:
Q  167 catgtgcgaatttgcacatgatagaaaaaccct 199  Q
    ||||||| |||||||||||||||||||||||||    
T  47333 catgtgcaaatttgcacatgatagaaaaaccct 47301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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