View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_low_35 (Length: 245)
Name: NF9918_low_35
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 50566646 - 50566840
Alignment:
| Q |
18 |
taaatattgtctgaggagtttatttttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcgaagcaattgcactccaatctc |
117 |
Q |
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| T |
50566646 |
taaatattgtctgaggtgtttatttttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcgaagcaattgcactccaatctc |
50566745 |
T |
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| Q |
118 |
gtagtgcagtgtacaaacccaaggcaagtttcatctgctcattcattgtgaatctcattcaaataccatctgtgttatgtatgcaagtctctgtg |
212 |
Q |
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| T |
50566746 |
gtagcgcagtgtacaaacccaaggcaagtttcatctgctcattcattgtgaatctcattcaaataccatctgtgttatgtatgcaagtctgtgtg |
50566840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 9987602 - 9987490
Alignment:
| Q |
42 |
tttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcgaagcaattgcactccaatctcgtagtgcagtgtacaaacccaagg |
141 |
Q |
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| T |
9987602 |
tttacttccagaaatattgtttcaacagtcaatttggacaccaagttggatctcaaagcaattgcactccaagctcgtaatgcagagtacaatcccaagg |
9987503 |
T |
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| Q |
142 |
caagtttcatctg |
154 |
Q |
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| T |
9987502 |
caagtttcatctg |
9987490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 50572504 - 50572678
Alignment:
| Q |
40 |
tttttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcgaagcaattgcactccaatctc---------gtagtgcagtgta |
130 |
Q |
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| T |
50572504 |
tttttacttgcagaaatattgtttcaacagtaaattgggggcgtaagttagatctcaaagcgattggtctccaagctcctaacactcgtattgtgacgta |
50572603 |
T |
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| Q |
131 |
caaacccaaggcaagtttcatctgctcattcattgtgaatctcattcaaataccatctgtgttatgtatgcaagt |
205 |
Q |
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| T |
50572604 |
caagcccaaggcaagtttcatctgctcaatcgttgtgaatgtcatccaaatactatatgtgttatgtatgcaagt |
50572678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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