View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9918_low_36 (Length: 231)

Name: NF9918_low_36
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9918_low_36
NF9918_low_36
[»] scaffold0110 (3 HSPs)
scaffold0110 (1-213)||(11873-12085)
scaffold0110 (1-213)||(19610-19822)
scaffold0110 (1-211)||(27311-27521)


Alignment Details
Target: scaffold0110 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 12085 - 11873
Alignment:
Q  1 ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaaccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||    
T  12085 ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaacccctt 11986  T
Q  101 aggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaagaagaaa 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  11985 aggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaattaagaagaagaaa 11886  T
Q  201 aacatggaataaa 213  Q
    |||||||||||||    
T  11885 aacatggaataaa 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 19822 - 19610
Alignment:
Q  1 ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaaccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||    
T  19822 ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaacccctt 19723  T
Q  101 aggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaagaagaaa 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  19722 aggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaattaagaagaagaaa 19623  T
Q  201 aacatggaataaa 213  Q
    |||||||||||||    
T  19622 aacatggaataaa 19610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27521 - 27311
Alignment:
Q  1 ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaaccttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||    
T  27521 ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctctacttgataagcagaagttgcaactccaaacacaaacccctt 27422  T
Q  101 aggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaagaagaaa 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||    
T  27421 aggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaactccattaactgaactaacaagaacaactaagaagaagaaa 27322  T
Q  201 aacatggaata 211  Q
    |||||||||||    
T  27321 aacatggaata 27311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University