View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9918_low_4 (Length: 496)
Name: NF9918_low_4
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 37792444 - 37792920
Alignment:
| Q |
1 |
acttattaatattttaaattattaggagagttgatttactttaaacatctacgcttgttatgatgatcaaatgatttatatagtgcagatggaccgtgat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37792444 |
acttattaatattctaaattattaggagagttgatttactttaaacatctacgctttttatgatgatcaaatgatttatatagtgcagatggaccgtgat |
37792543 |
T |
|
| Q |
101 |
tgcttcaaattttccagggagaaccgataatgagataaagaatcactggcacactaccttgaagaagcgttttgtaaagaatatcaagtctaaacgtgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37792544 |
tgcttcaaattttccagggagaaccgataatgagataaagaatcactggcacactaccttgaagaagcgttttgtaaagaatatcaagtcgaaacgtgga |
37792643 |
T |
|
| Q |
201 |
acgagaatagcaaaagattcaaattcaaataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattg |
300 |
Q |
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| T |
37792644 |
acgagaatagcaaaagattcaaattcaaataatcaccctacattggaagaacctaagaaatttgaagtagttttagagagcaacaatgatcctaatattg |
37792743 |
T |
|
| Q |
301 |
caaatcaaatatctccacaaccatcttcaagcgaattgtcttgcataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacata |
400 |
Q |
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| T |
37792744 |
caaatcaaatatctccgcaaccatcttcaagcgaattgtcttgcataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacata |
37792843 |
T |
|
| Q |
401 |
catggacaattttagtgagagtttctggacagagccatatatgatagacaattcatatgtcccccataatcacccta |
477 |
Q |
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| T |
37792844 |
catggagaattttagtgagaatttctggacagagccatatatgatagacaattcatatgtcccccataatcacccta |
37792920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 60 - 290
Target Start/End: Original strand, 37809094 - 37809331
Alignment:
| Q |
60 |
atgatgatcaaatgatttatata----gtgcagatggaccgtgattgcttcaaattttccagggagaaccgataatgagataaagaatcactggcacact |
155 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||| ||||| || ||||||| ||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
37809094 |
atgataatcaaatgatttatattaattgtgcagatggaccatgatttctgcaaatttaccagggagaacagataacgagataaagaactactggcacacc |
37809193 |
T |
|
| Q |
156 |
accttgaagaagcgttttgtaaagaata--tc-aagtctaaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattggaagaac |
252 |
Q |
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| T |
37809194 |
accataaaaaagactcttgtaaagaataagtcaaacaccaaacgtggaacgaaaaaagccaaagactcaaattcaaaaaatcaccctacaatggaaaaac |
37809293 |
T |
|
| Q |
253 |
ctaagaaatttgaaggagttttagagaacaacaatgat |
290 |
Q |
| |
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| T |
37809294 |
ccaagaaacttggagaaatgttagagaacaacagtgat |
37809331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 37793173 - 37793246
Alignment:
| Q |
229 |
ataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgca |
302 |
Q |
| |
|
|||| |||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
37793173 |
ataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataatcctaatactgca |
37793246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 351
Target Start/End: Original strand, 37792909 - 37793031
Alignment:
| Q |
229 |
ataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgcaaatcaaatatctccacaaccatcttc |
328 |
Q |
| |
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|||||||||||||| |||||||| | |||||| ||||||||||||| |||||||| | ||||| |||||| | | || | ||||| ||||||||| ||| |
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| T |
37792909 |
ataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttc |
37793008 |
T |
|
| Q |
329 |
aagcgaattgtcttgcataacaa |
351 |
Q |
| |
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||| | ||| ||||||||||||| |
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| T |
37793009 |
aagtggattctcttgcataacaa |
37793031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 455
Target Start/End: Original strand, 37793272 - 37793366
Alignment:
| Q |
361 |
caattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttctggacagagccatatatgatagacaattca |
455 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| ||||||| || ||||| ||||||| ||||||| |||||||||||||||| |||| |||| |
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| T |
37793272 |
caattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatgattgacagttca |
37793366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 360
Target Start/End: Original strand, 37793378 - 37793508
Alignment:
| Q |
230 |
taatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgcaaatcaaatatctccacaaccatcttca |
329 |
Q |
| |
|
|||||||| |||| |||||||| | |||||| ||||||||||||| ||| |||||| |||||| |||| || | || | ||||| |||||||||| ||| |
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| T |
37793378 |
taatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatca |
37793477 |
T |
|
| Q |
330 |
agcgaattgtcttgcataacaatggacaatg |
360 |
Q |
| |
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| | ||| |||| ||||||||||| |||| |
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| T |
37793478 |
aatggattctcttcaataacaatggaaaatg |
37793508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 37809493 - 37809533
Alignment:
| Q |
422 |
tttctggacagagccatatatgatagacaattcatatgtcc |
462 |
Q |
| |
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||||||||||||||||||||| ||||||| || |||||||| |
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| T |
37809493 |
tttctggacagagccatatataatagacagtttatatgtcc |
37809533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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