View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9918_low_5 (Length: 484)

Name: NF9918_low_5
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9918_low_5
NF9918_low_5
[»] chr6 (2 HSPs)
chr6 (76-373)||(9764738-9765038)
chr6 (5-75)||(9764601-9764669)
[»] scaffold0050 (1 HSPs)
scaffold0050 (284-370)||(44323-44409)
[»] chr3 (3 HSPs)
chr3 (287-372)||(42391152-42391237)
chr3 (284-370)||(52093343-52093429)
chr3 (286-370)||(52090207-52090291)
[»] chr4 (2 HSPs)
chr4 (283-370)||(43382381-43382468)
chr4 (287-371)||(11983316-11983400)
[»] chr8 (1 HSPs)
chr8 (287-370)||(30566766-30566849)
[»] chr1 (1 HSPs)
chr1 (286-370)||(26124492-26124576)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 76 - 373
Target Start/End: Original strand, 9764738 - 9765038
Alignment:
Q  76 aagaattcattttatcatttacagaactaaagcacttctgttggaaaacacaatttatctgaatannnnnnnngtttcaacgccaacacgagtagaaaca 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||        ||||||||||||||||||||||||| |    
T  9764738 aagaattcattttatcatttacagaactaaagcacttctgttggaaaacagaatttctctgaatattttttt-gtttcaacgccaacacgagtagaaaga 9764836  T
Q  176 ----tacacatgaaaatacttcaaaacgttgatcaaaccaaaaacatttatgaaggccaccctcgtatcaatgcaatggagttaaataattttgttttgt 271  Q
        || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9764837 aatatatacatgaaaatatttcaaaacgttgatcaaaccaaaaacatttatgaaggccaccctcgtatcaatgcaatgaagttaaataattttgttttgt 9764936  T
Q  272 atacaatcaacatcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgcat 371  Q
     |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9764937 gtacaaagaacatcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgcat 9765036  T
Q  372 tc 373  Q
    ||    
T  9765037 tc 9765038  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 9764601 - 9764669
Alignment:
Q  5 tgtacatcataaatgtgcactttactgttcacacgatgatctctcttatagcttgtcatacaaaattataa 75  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| ||| || ||||||||||||||||    
T  9764601 tgtacatcataaatgtgcactttactgtt--cacgatgatctctcttctagtttatcatacaaaattataa 9764669  T

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Target: scaffold0050 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 44323 - 44409
Alignment:
Q  284 tcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44323 tcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgca 44409  T

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Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 287 - 372
Target Start/End: Original strand, 42391152 - 42391237
Alignment:
Q  287 agcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgcatt 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42391152 agcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgcatt 42391237  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 52093343 - 52093429
Alignment:
Q  284 tcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52093343 tcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcaaaccccacagcctgca 52093429  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 52090207 - 52090291
Alignment:
Q  286 aagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52090207 aagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcaaaccccacagcctgca 52090291  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 283 - 370
Target Start/End: Original strand, 43382381 - 43382468
Alignment:
Q  283 atcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgca 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43382381 atcaagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcaaaccccacagcctgca 43382468  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 11983316 - 11983400
Alignment:
Q  287 agcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgcat 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11983316 agcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcaaaccccacagcctgcat 11983400  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 370
Target Start/End: Complemental strand, 30566849 - 30566766
Alignment:
Q  287 agcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgca 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30566849 agcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcaaaccccacagcctgca 30566766  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 26124576 - 26124492
Alignment:
Q  286 aagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcgaaccccacagcctgca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  26124576 aagcaggcttgcccgagtggtctaagggggtagacttaagacctactgcactgagtgcgcgtgggttcaaaccccacagcttgca 26124492  T

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