View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9918_low_9 (Length: 425)
Name: NF9918_low_9
Description: NF9918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9918_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 37 - 407
Target Start/End: Original strand, 31327844 - 31328218
Alignment:
| Q |
37 |
taatttaatgcaatcacaagtgtcgt-----gtcagcgtcggacactgaaacacacattcaatcagaagtgttggtgtaacagagattatgctattaaca |
131 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31327844 |
taatttaatgcaatcacaagtgtcgtatcgtgtcagcgtcggacagtggaacacacattcaatcagaagtgttggtgtaacagagattatgctattaaca |
31327943 |
T |
|
| Q |
132 |
cttagttaaattgtttatccaaaccgagcctattactatgctaaccaaacctctatgacaaaataacaagccaagatgaatacatgaaataatcataaca |
231 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31327944 |
cttagttaaattgtttatccaaactgagcctattactatgctaactaa-cctctatgacataataacaagccaagatgaatacatgaaataatcaaaaca |
31328042 |
T |
|
| Q |
232 |
aaccaatctaattaacttcattgttcagaacnnnnnnntaaatatgataacaagaaagatgaaactattacattataatatgttatgatatgattgtgat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31328043 |
aaccaatctaattaacttcattgttcagaacaaaaaaataaatatgataacaagaaagatgaaactattacattataatatgttatgatatgattgtgat |
31328142 |
T |
|
| Q |
332 |
acatatgaacaaaatcacttcttattcttcttaacctttccaatacttaaaaacgaaccaaacctaaagaaatttg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31328143 |
acatatgaacaaaatcacttcttattcttcttaacctttccaatacttaaaaacgaaccaaacctaaagaaatttg |
31328218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 13484072 - 13484127
Alignment:
| Q |
61 |
gtgtcagcgtcggacactgaaacacacattcaatcagaagtgttggtgtaacagag |
116 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
13484072 |
gtgtcagtgtcggacactggaacatgcattcaatcagaagtgttggtgcaacagag |
13484127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 17125776 - 17125818
Alignment:
| Q |
113 |
agagattatgctattaacacttagttaaattgtttatccaaac |
155 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
17125776 |
agagattatgctattagcacttaataaaattgtttatccaaac |
17125818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 8422986 - 8423030
Alignment:
| Q |
116 |
gattatgctattaacacttagttaaattgtttatccaaaccgagc |
160 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||||||||| |||| |
|
|
| T |
8422986 |
gattatgctataaacacttaattaagttgtttatccaaactgagc |
8423030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26915306 - 26915230
Alignment:
| Q |
1 |
acacgtcaacaccgataaaattttnnnnnnntgacgtaatttaatgcaatcacaagtgtcgtgtcagcgtcggacac |
77 |
Q |
| |
|
||||||| |||| ||||||||||| |||| |||||||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
26915306 |
acacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggacac |
26915230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University