View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_high_11 (Length: 251)
Name: NF9919_high_11
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5655009 - 5654767
Alignment:
| Q |
1 |
tcataggttacagcaaaggttgcatagtcaaatgtaattatgttgtttcttttagcagttaagtgtgttccttttggcgtctgatacatttttcaaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655009 |
tcataggttacagcaaaggttgcatagtcaaatgtaattatgttgtttcttttagcagttaagtgtgttccttttggcgtctgatacatttttcaaatgt |
5654910 |
T |
|
| Q |
101 |
atgtatcagtgtcttacctagtattcgtgtttgtgtcaatatttcataggctctggcattcgcatttgaaattatgtctagacaccaaaacatgtataca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5654909 |
atgtatcagtgtcttacctagtattcgtgtttgtgtcaatatttcataggctccggcattcgcatttgaaattatgtctagacaccaaaacatgtataca |
5654810 |
T |
|
| Q |
201 |
ctcannnnnnngcttcttgataaaaaatgagcatgtctctgct |
243 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| |||| |
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| T |
5654809 |
ctcatttttttgctgcttgataaaaaatgagcatgtctttgct |
5654767 |
T |
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