View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_high_8 (Length: 363)
Name: NF9919_high_8
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 38284839 - 38285164
Alignment:
| Q |
18 |
caaagaatgtttaactctgttgtggtggttaagccgtggcttcatcagtacaagaaggttatccattttggtccttcatccaccttccaccaacatacta |
117 |
Q |
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| T |
38284839 |
caaagaatgtttaactctgttgtggtggttaagccgtggcttcatcagtacaagaaggttatccattttggtccttcatccaccttccaccaacatacta |
38284938 |
T |
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| Q |
118 |
ctatgtaattagaatttggacttggacctaaataagtaccactacatgtctatatggtttcttttactaga----tgcatatggcgcggtgtttgtaatt |
213 |
Q |
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| T |
38284939 |
ctatgtaattagaatttggacttggacctaaataagtaccactacatgtctatatggtttcttttactagatgcgtgcatatggcgcggtgtttgcaatt |
38285038 |
T |
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| Q |
214 |
gcaactgagttttttcctttcttcaattttatcaattaatnnnnnnntatattctctactgttttgtgtgg--tgtatatgtcaactaaaagaaatgaaa |
311 |
Q |
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| T |
38285039 |
gcaactgagttttttcctttcttcaattttatc---taa--------tatattctctactgttttgtgtggtatatatatttcaactaaaagaaatgaaa |
38285127 |
T |
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| Q |
312 |
caattaacatatattctaaagtgtttactactatctgtg |
350 |
Q |
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| T |
38285128 |
caattaac--atatcctaaagtgtttactactatctgtg |
38285164 |
T |
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