View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_low_1 (Length: 550)
Name: NF9919_low_1
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 42026662 - 42026126
Alignment:
| Q |
1 |
tatctaatgaactgtctctctgcacctttctttcacaacacataatcnnnnnnngcatatccaaggtgtggtggttaacttgtccatctatctatcaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026662 |
tatctaatgaactgtctctctgcacctttctttcacaacacataatcaaaaaaagcatatccaaggtgtggtggttaacttgtccatctatctatcaatc |
42026563 |
T |
|
| Q |
101 |
aatcagtcaatcaagagaccaatcatcaaaccgaatatataatgtcgtcctcttcaaccacaacattatccttggaccacctccctccttccgagcaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026562 |
aatcagtcaatcaagagaccaatcatcaaaccgaatatataatgtcgtcctcttcaaccacaacattatccttggaccacctccctccttccgagcaact |
42026463 |
T |
|
| Q |
201 |
ttgttatgtccactgcaccatctgtgacaccatccttgctgtatgaaacatcactattttttctcactttccaacactaccttagctagggtttttcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026462 |
ttgttatgtccactgcaccatctgtgacaccatccttgctgtatgaaacatcactattttttctcactttccaacactaccttagctagggtttttcttc |
42026363 |
T |
|
| Q |
301 |
tccattttcttttatgcaaatataactgattctccttcatcttttttcaggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026362 |
tccattttcttttatgcaaatataactgattctccttcatcttttttcaggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcgg |
42026263 |
T |
|
| Q |
401 |
tcattgcactaatctgcttccagttaacatgcgtgcattacttctgccatcccctaatcagtttcatttgggacactctttcttctccccaactcatcat |
500 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026262 |
tcattgcactaatctgcttccagtcaacatgcgtgcattacttctgccatcccctaatcagtttcatttgggacactctttcttctccccaactcatcat |
42026163 |
T |
|
| Q |
501 |
aaccttctggttatactttcttttttccctcttatct |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42026162 |
aaccttctggttatactttcttttttccctcttatct |
42026126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 436
Target Start/End: Original strand, 8885823 - 8885917
Alignment:
| Q |
342 |
ttttttcaggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcggtcattgcactaatctgcttccagttaacatgcgtgc |
436 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || || || |||||||||||||||| |
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| T |
8885823 |
ttttctcaggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattgcaccaaccttctctcagttaacatgcgtgc |
8885917 |
T |
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