View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9919_low_10 (Length: 338)

Name: NF9919_low_10
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9919_low_10
NF9919_low_10
[»] chr8 (12 HSPs)
chr8 (17-336)||(2055501-2055820)
chr8 (17-259)||(2051722-2051963)
chr8 (17-148)||(2058893-2059024)
chr8 (17-145)||(1948203-1948331)
chr8 (17-144)||(2029703-2029830)
chr8 (17-121)||(10769373-10769477)
chr8 (17-128)||(2034637-2034748)
chr8 (17-134)||(2047952-2048069)
chr8 (17-106)||(2038737-2038826)
chr8 (195-247)||(2058835-2058887)
chr8 (282-335)||(2058389-2058442)
chr8 (71-104)||(2023297-2023330)
[»] chr2 (3 HSPs)
chr2 (17-103)||(28735009-28735095)
chr2 (17-103)||(28699509-28699595)
chr2 (23-112)||(28742148-28742237)
[»] chr4 (1 HSPs)
chr4 (17-103)||(48904983-48905069)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 2055820 - 2055501
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2055820 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 2055721  T
Q  117 acaaagaattagctatgtgtttacatctattaaccaatcctttcaattaatatcttacaaacctgaccaaaaatcgaatcaatgagaccttaaggtcatg 216  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  2055720 acaaagaattagttatgtgtttacatctattaaccgatcctttcaaataatatcttaaaaacctgaccaagaatcgaatcaatgagaccttaaggtcatg 2055621  T
Q  217 gtttaatattggttcaatcacgatcgaacctgattacacatgaatcaattactattatcaatttgaatagaccgtgatgggtttggtcaatctaatatgt 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2055620 gtttaatattggttcaatcacgatcgaacctgattacacacgaatcaattactattatcaatttgaatagaccgtgatgggtttggtcaatctaatatgt 2055521  T
Q  317 ccgatgagaagtctctgctc 336  Q
    ||||||||||||||||||||    
T  2055520 ccgatgagaagtctctgctc 2055501  T

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Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 2051963 - 2051722
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    ||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  2051963 aaaagcatgcaacggatattcttggaccaacttgatttgcaagtactctatgtacaacactcttgaatttgtcatttgtaataagctacaattcaaacaa 2051864  T
Q  117 acaaagaattagctatgtgtttacatctattaaccaatcctttcaattaatatcttacaaacctgaccaaaaatcgaatcaatgagaccttaaggtcatg 216  Q
    ||||| |||||| | | |||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  2051863 acaaataattagttgtatgtttacatctatt-atcgatccttccaattaatatcttaaaaacctgaccaaaaatcgaatcaattagacctttaggtcatg 2051765  T
Q  217 gtttaatattggttcaatcacgatcgaacctgattacacatga 259  Q
    ||||||||||||||||| ||||||||| |||| | ||||||||    
T  2051764 gtttaatattggttcaaacacgatcgatcctggtgacacatga 2051722  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 2059024 - 2058893
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2059024 aaaagcatgcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaa 2058925  T
Q  117 acaaagaattagctatgtgtttacatctatta 148  Q
     |||| |||||| ||| |||||||| ||||||    
T  2058924 tcaaataattagatatatgtttacacctatta 2058893  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 1948203 - 1948331
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    ||||||||||||||||||||||||||||||||  ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  1948203 aaaagcatgcaacagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatttgtcatttgttataagctacaaatcaaacaa 1948302  T
Q  117 acaaagaattagctatgtgtttacatcta 145  Q
      ||| |||||||||| ||||| ||||||    
T  1948303 gaaaataattagctatatgtttgcatcta 1948331  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 2029830 - 2029703
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    ||||||||||||||||||||||||||||||||  ||| |||| |||||||||| |||||||||||||| | |||||||||||||||||||    ||||||    
T  2029830 aaaagcatgcaacagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatctatcatttgttataagctacaaggtaaacaa 2029731  T
Q  117 acaaagaattagctatgtgtttacatct 144  Q
    ||||| |||||| ||| || ||||||||    
T  2029730 acaaataattagttatatgcttacatct 2029703  T

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Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 10769477 - 10769373
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    |||| ||||||||||||||||||||||||||  |||| ||||| ||||| ||  | |||||||||||||||||||||||||||||||||| |||||||||    
T  10769477 aaaaacatgcaacagatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgttataagctacacttcaaacaa 10769378  T
Q  117 acaaa 121  Q
     ||||    
T  10769377 gcaaa 10769373  T

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Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 2034748 - 2034637
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    |||||||||| |||||||||||||| ||||||  ||| |||| |||||| ||| |||||||||||||| ||||||||||||||||||||| || || |||    
T  2034748 aaaagcatgccacagatattcttgggccaacttcatttgcaactactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaa 2034649  T
Q  117 acaaagaattag 128  Q
    ||||| ||||||    
T  2034648 acaaataattag 2034637  T

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Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 2048069 - 2047952
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaa 116  Q
    |||||| ||| ||||||||||||||||||| | |||| ||||||||| | ||| ||| |||||||||| |||||||||||||||||||||    ||||||    
T  2048069 aaaagcttgctacagatattcttggaccaattttatttgcaagtactttgtgttcaaaactcttgaatctgtcatttgttataagctacaagataaacaa 2047970  T
Q  117 acaaagaattagctatgt 134  Q
    ||||| ||||||||||||    
T  2047969 acaaataattagctatgt 2047952  T

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Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 2038826 - 2038737
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctaca 106  Q
    |||||||||| ||||||||||  ||||||| | |||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  2038826 aaaagcatgctacagatattcgcggaccaattttattcgcaagtactctgtgttcaacactcttgaatctgtcatttgttataagctaca 2038737  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 2058887 - 2058835
Alignment:
Q  195 tcaatgagaccttaaggtcatggtttaatattggttcaatcacgatcgaacct 247  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  2058887 tcaatgagacctttaggtcatggtttaatattggttcaatcacgatcggacct 2058835  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 2058442 - 2058389
Alignment:
Q  282 aatagaccgtgatgggtttggtcaatctaatatgtccgatgagaagtctctgct 335  Q
    |||||||  |||||||||||||||||||| |||||||||||||| |||| ||||    
T  2058442 aatagactatgatgggtttggtcaatctactatgtccgatgagaggtctttgct 2058389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 2023330 - 2023297
Alignment:
Q  71 caacactcttgaatttgtcatttgttataagcta 104  Q
    ||||||||||||||||||||||||| ||||||||    
T  2023330 caacactcttgaatttgtcatttgtaataagcta 2023297  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 28735009 - 28735095
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgt-attggcaagtactctatgtacaacactcttgaatttgtcatttgttataagct 103  Q
    |||||||||||||||||||||||||||||| ||| ||| || |||||||||||| |||||||||||||||| ||||||||||||||||    
T  28735009 aaaagcatgcaacagatattcttggaccaa-tgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 28735095  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 28699509 - 28699595
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagct 103  Q
    ||||||||||||||||||||||||||||||    ||| || |||||||||||| |||||||||||||||||||||||||||| ||||    
T  28699509 aaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcatttgttatcagct 28699595  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 28742148 - 28742237
Alignment:
Q  23 atgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaa 112  Q
    |||||||||||| |||||||||||  ||||| || |||||||| ||  |||||||||||||| |||||||||||||||||| ||||||||    
T  28742148 atgcaacagatactcttggaccaatagtatttgctagtactctgtgctcaacactcttgaatctgtcatttgttataagctgcagttcaa 28742237  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 48904983 - 48905069
Alignment:
Q  17 aaaagcatgcaacagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagct 103  Q
    ||||||||||| ||||||||||||||||||||  ||| |||| |||||| ||| |||||||||| || |||||||||||||||||||    
T  48904983 aaaagcatgcagcagatattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagct 48905069  T

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