View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9919_low_11 (Length: 314)
Name: NF9919_low_11
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_11 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 20238074 - 20237790
Alignment:
| Q |
20 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20238074 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
20237975 |
T |
|
| Q |
120 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20237974 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
20237875 |
T |
|
| Q |
220 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcacctctgtg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20237874 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtg |
20237790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 22132058 - 22131774
Alignment:
| Q |
20 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22132058 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
22131959 |
T |
|
| Q |
120 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22131958 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
22131859 |
T |
|
| Q |
220 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcacctctgtg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22131858 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtg |
22131774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 20086155 - 20085877
Alignment:
| Q |
26 |
tatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagt |
125 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||| | |
|
|
| T |
20086155 |
tatatcctttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaat |
20086056 |
T |
|
| Q |
126 |
ttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcaca |
225 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| | |
|
|
| T |
20086055 |
ttatctttcctataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcgaa |
20085956 |
T |
|
| Q |
226 |
acattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcacctctgtg |
304 |
Q |
| |
|
| ||| ||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
20085955 |
aaattttatactgttaaagtggatgaaatggtgtacggcctcttcttgtgtcgaggtgaccttcctgttcgcctctgtg |
20085877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 22205002 - 22205272
Alignment:
| Q |
20 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
119 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
22205002 |
atgaactatatcctttttataggtctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaaga |
22205101 |
T |
|
| Q |
120 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
219 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22205102 |
tccattttatctttcctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaat |
22205201 |
T |
|
| Q |
220 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcc |
290 |
Q |
| |
|
||| || ||||| | | ||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22205202 |
ggcggaaatttccaaaaagtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcc |
22205272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 24385214 - 24385484
Alignment:
| Q |
20 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
119 |
Q |
| |
|
|||| |||| ||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
24385214 |
atgaactatttcctttttataaatctattattgctccttcatcaaatgagcttgttcctcaaacaaatgattcaaaacaagattctagattttcacaaga |
24385313 |
T |
|
| Q |
120 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
219 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||| || |||||| ||| | |||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
24385314 |
tccaatttatctttcctataattgctcaagaaaccacaatataatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccacaaat |
24385413 |
T |
|
| Q |
220 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcc |
290 |
Q |
| |
|
|||| || |||| ||| || ||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24385414 |
ggcaaaaaattctatactgtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcc |
24385484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 20205475 - 20205210
Alignment:
| Q |
26 |
tatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagt |
125 |
Q |
| |
|
||||||| |||||||| |||| || || || ||||| ||||||||| | ||||| |||||||||||| |||||||||||||| || || |||| || | |
|
|
| T |
20205475 |
tatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcatt |
20205376 |
T |
|
| Q |
126 |
ttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcaca |
225 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | |||| | |
|
|
| T |
20205375 |
ttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaa |
20205276 |
T |
|
| Q |
226 |
acattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcct |
291 |
Q |
| |
|
| ||| |||| |||||||||||||| ||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
20205275 |
aaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcct |
20205210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 22099498 - 22099233
Alignment:
| Q |
26 |
tatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagt |
125 |
Q |
| |
|
||||||| |||||||| |||| || || || ||||| ||||||||| | ||||| |||||||||||| |||||||||||||| || || |||| || | |
|
|
| T |
22099498 |
tatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcatt |
22099399 |
T |
|
| Q |
126 |
ttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcaca |
225 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | |||| | |
|
|
| T |
22099398 |
ttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaa |
22099299 |
T |
|
| Q |
226 |
acattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcct |
291 |
Q |
| |
|
| ||| |||| |||||||||||||| ||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
22099298 |
aaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcct |
22099233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 21972039 - 21971847
Alignment:
| Q |
26 |
tatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattt---tacacaagatcc |
122 |
Q |
| |
|
||||||| |||||||| |||||| ||| || ||| | ||||||||||| |||||||||||||||||| | |||||||||||| | | || ||||||| |
|
|
| T |
21972039 |
tatatccattttataggtctacttatgttctttccccaaatgagcttgctcctcaaacaaatgattccatacaagattctaaaatactttcagaagatcc |
21971940 |
T |
|
| Q |
123 |
agtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccac |
215 |
Q |
| |
|
| ||||||||||| |||||||| ||||||| ||| |||||||||| |||||||| ||||| ||||||| |||||||||| || |||||||| |
|
|
| T |
21971939 |
attttatctttcctataattgctcaagaaattacaatacaatcactgacaaaaacatcaaactacttctgtcttatttgttgtcgaacgccac |
21971847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 47831 - 48098
Alignment:
| Q |
20 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
119 |
Q |
| |
|
|||| ||||||||||||||||| |||| || | |||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
47831 |
atgaactatatcctttttataggtctatcaa---tacttcaccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctagattttcacaaga |
47927 |
T |
|
| Q |
120 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
219 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47928 |
tccaatttatctttcctataattgcccaagaaaccacagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaat |
48027 |
T |
|
| Q |
220 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcc |
290 |
Q |
| |
|
||| || || ||||| || |||||||||||||| | |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
48028 |
ggcgaaaaatcccatactgttaaagtggaagaaatgctgtatggcctcttcatgtgtcgaggtgaccttcc |
48098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 16110 - 15841
Alignment:
| Q |
20 |
atgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaaga |
119 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||| |
|
|
| T |
16110 |
atgaactatatcctttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaaga |
16011 |
T |
|
| Q |
120 |
tccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaat |
219 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
16010 |
tccaatttatctttcctataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaa-t |
15912 |
T |
|
| Q |
220 |
ggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcc |
290 |
Q |
| |
|
|||| || ||||| | | ||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15911 |
ggcagaaatttccaaaaagtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcc |
15841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 5352 - 5642
Alignment:
| Q |
20 |
atgagctatatcctttttatagatct---actaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacaca |
116 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || | || |||||| |||||||||||||||||||||||| |||||||||||||| ||| ||| || | |
|
|
| T |
5352 |
atgaactatatcctttttataggtctatcaatactacttcttcaccaaatgagcttgttcctcaaacaaactattcaaaacaagatactagattttcaaa |
5451 |
T |
|
| Q |
117 |
agatccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccaca |
216 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5452 |
agatcccttttatctttcctataattgctcaagaaaccaaagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccaca |
5551 |
T |
|
| Q |
217 |
aatggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcacctctgtgctc |
307 |
Q |
| |
|
|||||| || || ||||| || |||||||||||||| | |||| ||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
5552 |
aatggcgaaaaatcccatactgttaaagtggaagaaacgctgtatggcctcttcatgtgtcgaggtgaccttcccgttcacctctgtgctc |
5642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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