View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9919_low_15 (Length: 250)
Name: NF9919_low_15
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 30801339 - 30801572
Alignment:
| Q |
4 |
tacaaaagacacatcatttaatgcnnnnnnnncaaattcaaatttccctcctagatatgaatgtcctttcataagccttaattaagttgccaactacctc |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
30801339 |
tacaaaagacacatcatttaatgcttttttttcaaattcaaattttcctcctagatatgaatgtcctttcataagccttaattgagttgccaattacctc |
30801438 |
T |
|
| Q |
104 |
acttaatgccttaaacaatccttaaaaatgtgttatacaagctaaagacacatcatttaatggttttttatttcgaattcaaattttcctcccaaaatta |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
30801439 |
acttaatgccttaagcaatccttaaaaatgtgttatacaagctaaaaacacatcatttaatg--tttttttttcaaattcaaattttcctcccaaaatta |
30801536 |
T |
|
| Q |
204 |
agatagaagattatgactccaattttgatgatctgt |
239 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30801537 |
agatagaagactatgactccaattttgatgatctgt |
30801572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 30799855 - 30799969
Alignment:
| Q |
37 |
aaattcaaatttccctcctagatatgaatgtcctttcataagccttaattaagttgccaactacctcacttaatgccttaaacaatccttaaaaatgtgt |
136 |
Q |
| |
|
|||||||||||| ||||| | || | |||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
30799855 |
aaattcaaattttcctcccaaatgtaaatgtcctttcataagtcttaattgagttgacaactacctcacttaatgtcttaagcaatccttaaaagtgtgt |
30799954 |
T |
|
| Q |
137 |
tatacaagctaaaga |
151 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
30799955 |
tatgcaagctaaaga |
30799969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 30799798 - 30799876
Alignment:
| Q |
119 |
caatccttaaaaatgtgttatacaagctaaagacacatcatttaatggttttttatttcgaattcaaattttcctcccaaa |
199 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
30799798 |
caatccttaaaagtgtgttatgcaagctaaagacacgtcatttaatg--ttttttttttaaattcaaattttcctcccaaa |
30799876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 23890724 - 23890880
Alignment:
| Q |
36 |
caaattcaaatttccctcctagatatgaatgtcctttcataagccttaattaagttgccaactacctcacttaatgccttaaacaatccttaaaaatgtg |
135 |
Q |
| |
|
||||||||||||||||||| | || | |||||||||||||||| ||||||| |||||||| ||||||| ||||||| ||||| |||||||||||| |||| |
|
|
| T |
23890724 |
caaattcaaatttccctcccaaatgtaaatgtcctttcataagtcttaattgagttgccagctacctcgcttaatgtcttaagcaatccttaaaagtgtg |
23890823 |
T |
|
| Q |
136 |
ttatacaagctaaagacacatcatttaatggttttttatttcgaattcaaattttcctcc |
195 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||| |||| ||||||||||| ||||| |
|
|
| T |
23890824 |
ttatgcaagctaaagacacatcatttattg---ttttttttcaaattcaaatttccctcc |
23890880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 23890454 - 23890545
Alignment:
| Q |
81 |
ttaattaagttgccaactacctcacttaatgccttaaacaatccttaaaaatgtgttatacaagctaaagacacatcatttaatggtttttt |
172 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||| |
|
|
| T |
23890454 |
ttaattgagttgccaaatacctcacttaatgtcttaagcaatccttaaaaatgtgttatgcaaactaaatacacatcatttaatgttttttt |
23890545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 23890668 - 23890746
Alignment:
| Q |
119 |
caatccttaaaaatgtgttatacaagctaaagacacatcatttaatggttttttatttcgaattcaaattttcctcccaaa |
199 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||||||| |
|
|
| T |
23890668 |
caatccttaaaaatgtgttatgcaatctaaagacacgctatttaatg--tttttttttcaaattcaaatttccctcccaaa |
23890746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 23891829 - 23891865
Alignment:
| Q |
203 |
aagatagaagattatgactccaattttgatgatctgt |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23891829 |
aagatagaagactatgactccaattttgatgatctgt |
23891865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 23890862 - 23890912
Alignment:
| Q |
36 |
caaattcaaatttccctcctagatatgaatgtcctttcataagccttaatt |
86 |
Q |
| |
|
||||||||||||||||||| | |||| |||||| |||||||||| |||||| |
|
|
| T |
23890862 |
caaattcaaatttccctccgaaatataaatgtcttttcataagctttaatt |
23890912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 8398286 - 8398240
Alignment:
| Q |
119 |
caatccttaaaaatgtgttatacaagctaaagacacatcatttaatg |
165 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
8398286 |
caatccctaaaagtgtgttatgcaagctaaagacacatcatttaatg |
8398240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University