View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_low_16 (Length: 249)
Name: NF9919_low_16
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1959753 - 1959995
Alignment:
| Q |
1 |
ttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgtt |
100 |
Q |
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| T |
1959753 |
ttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgtt |
1959852 |
T |
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| Q |
101 |
gtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttgcaa |
200 |
Q |
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| T |
1959853 |
gtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttgcaa |
1959952 |
T |
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| Q |
201 |
ctgatactcttggaccgacatgatttgctaccactctctgctc |
243 |
Q |
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| T |
1959953 |
ctgatactcttggaccgacatgatttgctaccactctgtgctc |
1959995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 2023569 - 2023330
Alignment:
| Q |
4 |
ttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2023569 |
ttgtgtgtatcagaaatttccaatcttgaaatatggcaaaggagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcactgttgtt |
2023470 |
T |
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| Q |
104 |
tccctatactttggaggattatcttctgatactaattcctttataggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttgcaactg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2023469 |
tccctatactttggaggattatcttctgatactaattcctttataggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttgcaactg |
2023370 |
T |
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| Q |
204 |
atactcttggaccgacatgatttgctaccactctctgctc |
243 |
Q |
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| T |
2023369 |
atactcttggaccgacatgatttgctaccactctgtgctc |
2023330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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