View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_low_2 (Length: 518)
Name: NF9919_low_2
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Complemental strand, 40178925 - 40178415
Alignment:
| Q |
8 |
gcaatgtagggaatcatctatatggtactctttcctaattctatctttctatgaagtttgtttcaccatacacttcatacatttatttatgcttaatgta |
107 |
Q |
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| T |
40178925 |
gcaatgtagggaatcatctatatggtactctttcctaattctatctttctatgaagtttgtttcaccatacacttcatacatttatttatgcttaatgta |
40178826 |
T |
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| Q |
108 |
tgttatgcagatagtgaaggtttacctattggaaagttaaacttgcagcgtagggtatccatcgccttaggcgcgtccaaaggtaaatccatcatagcca |
207 |
Q |
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| T |
40178825 |
tgttatgcagatagtgaaggtttacctattggaaagttaaacttgcagcgtagggtatccatcgccttaggcgcgtccaaaggtaaatccatcatagcca |
40178726 |
T |
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| Q |
208 |
tggtccattttacggtttagactttagagtaaacggtcaaattaatccttgagaaaaattacggagaggtaattagtctctgatgaatggaaattactaa |
307 |
Q |
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| T |
40178725 |
tggtccattttacggtttagactttagagtaaacggtcaaattaatccttgagaaaaattacggagaggtaattagtctctgatgaatggaaattactaa |
40178626 |
T |
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| Q |
308 |
tttaatcatcaaaaacctcaaatgaaagtcaagatttctgaggactaaattagcatcttctatttttcaaagatcaaacaagtctccgtattttttctcg |
407 |
Q |
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| T |
40178625 |
tttaatcatcaaaaacctcaaatgaaagtcaagatttctgaggactaaattagcatcttctatttttcaaagatcaaacaagtctccgtattttttctcg |
40178526 |
T |
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| Q |
408 |
aaaaaacagtttgaatctttactatattctttattcttttgaaattcaaaacagttaatccagtttctactttgaaacaggacttgaacatcttcacaat |
507 |
Q |
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| T |
40178525 |
aaaaaacagtttgaatctttactatattctttattcttttgaaattcaaaacagttaatccagtttctactttgaaacaggacttgaacatcttcacagt |
40178426 |
T |
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| Q |
508 |
ctggtccctcc |
518 |
Q |
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| T |
40178425 |
ctggtccctcc |
40178415 |
T |
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