View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_low_21 (Length: 234)
Name: NF9919_low_21
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 11622521 - 11622735
Alignment:
| Q |
1 |
tcatgccaccatggactgcaattgaccattctgttgtcatgagtagcccctatacgtaccccgttcctatgccaatgccaatccctccttgtccagtttc |
100 |
Q |
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| T |
11622521 |
tcatgccgccatggactgcaattgaccattctgttgtcatgagtagcccttatacgtaccccgttcctatgccaatgccaatccctgctggtccagtttc |
11622620 |
T |
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| Q |
101 |
cattcacccaccacctatgcaaccttttccttactttggaaaccaaaatcctggtcatattccaagtccatcctcaatgtatattccattctcggctcca |
200 |
Q |
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| T |
11622621 |
cattcacccaccacctatgcaaccttttccttactttggaaaccaaaatcctggtcatattccaagtctatcctcaatgtatattccattctcggctcca |
11622720 |
T |
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| Q |
201 |
gctatccctccaatg |
215 |
Q |
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| T |
11622721 |
gctatccctccaatg |
11622735 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 7517609 - 7517707
Alignment:
| Q |
116 |
tatgcaaccttttccttactttggaaaccaaaatcctggtcatattccaagtccatcctcaatgtatattccattctcggctccagctatccctccaatg |
215 |
Q |
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| T |
7517609 |
tatgcaaccttttccttgctttgaaaaccaaaattctggatatattctaggtctatgcttatagtatattccattctaggct-cagctaaccctccaatg |
7517707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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