View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9919_low_22 (Length: 231)
Name: NF9919_low_22
Description: NF9919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9919_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 48452134 - 48451934
Alignment:
| Q |
12 |
aagcaaaggtactgttaggtttgccattgctaaacaacacacaccagaaataaggagaccctctatcagtaccggttacagcagcaccgacctgagtgtg |
111 |
Q |
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| T |
48452134 |
aagcaaaggtgctgttaggtttgccattgctaaacaacacacaccagaaataaggagaccctccatcagtaccggttacagcagcaccgacctgagtgtg |
48452035 |
T |
|
| Q |
112 |
attcttactgtagagtatgtctaagctcttctcgtttcttatcaggatttcagaaaacgcctcaggtgcatggacatacttagtctggcaccccaagaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48452034 |
attcttactgtagagtatgtctaagctcttctcgtttcttatcaggatttcagaaaacgcctcaggtgcatggacatacttagtctggcaccccaagaaa |
48451935 |
T |
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| Q |
212 |
c |
212 |
Q |
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| T |
48451934 |
c |
48451934 |
T |
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